Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00119 ATGGGTGGACTGAGAAAACTGTCGAAGTTGAAACCCATAGCCGAAGAAGCATTGGCCGGAACAGTTTTCTTAGCGAAGCTCCTCTGTGGCCTTCATGTCGCCAACACATACGTCTGCACCGCCGCTCTTACCTACGGTCCCAGCATGCTCCCTACTCTGAACCTAACCGGCGATTTCATCTTTGCCGAACGGATCTCCACTCGTTTTGGCAGAGTTGGCGTCGGAGACATTGTCCTCGTGAGGTCCCCTGAGAACCCTCGCAAAGTAATGGCGAAGCGCTTGATGGGCATGGAAGGTGATTCTGTTACCTATGTTGTAGACCCGAAGAATAATGATTGGTGTGAAACTGTTGTGGTTCCCAAGGGACATGTTTGGATAGAGGGAGATAACATGTATGATTCAAAGGATTCAAGATATTTTGGGGCCGTCCCTTATGGTCTTCTGCAAGGGAAAGTATTCTGGAGGTTGTGGCCACCTAAAAGTTTTGGACCGTTGGAGAAGAGGAAACCGAATGAGACAGTCTTGTGA 528 49.24 MGGLRKLSKLKPIAEEALAGTVFLAKLLCGLHVANTYVCTAALTYGPSMLPTLNLTGDFIFAERISTRFGRVGVGDIVLVRSPENPRKVMAKRLMGMEGDSVTYVVDPKNNDWCETVVVPKGHVWIEGDNMYDSKDSRYFGAVPYGLLQGKVFWRLWPPKSFGPLEKRKPNETVL 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 638297 640381 - CmaCh07G001190.1 Cma07g00119 297434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00119 175 CDD S26_SPase_I 46 152 IPR019533 GO:0004252|GO:0006465
Cma07g00119 175 ProSitePatterns Signal peptidases I signature 3. 124 137 IPR019758 GO:0004252|GO:0016021
Cma07g00119 175 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 4 168 - -
Cma07g00119 175 Gene3D Umud Fragment, subunit A 34 168 - -
Cma07g00119 175 Pfam Signal peptidase, peptidase S26 25 104 IPR019533 GO:0004252|GO:0006465
Cma07g00119 175 Pfam Signal peptidase, peptidase S26 114 157 IPR019533 GO:0004252|GO:0006465
Cma07g00119 175 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 168 - -
Cma07g00119 175 SUPERFAMILY LexA/Signal peptidase 36 165 IPR036286 -
Cma07g00119 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma07g00119 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma07g00119 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00119 Cma-Chr7:638297 Cma16g00447 Cma-Chr16:2231904 6.51E-60 dispersed
Cma17g01319 Cma-Chr17:8903507 Cma07g00119 Cma-Chr7:638297 2.85E-07 dispersed
Cma07g00119 Cma-Chr7:638297 Cma07g00124 Cma-Chr7:651840 2.59E-86 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00119 K09647 - csv:101209167 315.849