Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00133 ATGGAGAAAGAGCCTCTTCTTCCATATATGAGCCCAAGAGGGAAACCGCCTTCTCTCCCTCAATTATATCCACTCCCTGAAAATGATGAAATTATTCTCCCTATGACGCCCACGGAGTTCAAAGATCGTCTGATCTTTGGCCCTTCATCTTCCCCTCAAGATGCTTCTTCTGCGTTCGATGCTTTGACACTGTCTCTTGCCTCACCGAGACCCTCTGCTTCGTCTTCTCGTCAGGACCCATCTACCCCTTTGGACCCCAAATCCCAATCGCCGTCTCAACAGGGATGGCTTGTGGATTCGAAGCATTCATGCCACAAAAGCAACCTCCACCGCTCTAAAACAGCACCTGCCATGGCGGTCATCAATGATATCAACCATTCGCAGGAGCCCAAGCCACAATTTGGCAAACAATCTATAATCCGCCAAGCTGTTGTTCTTCTAATTATTTACTTATCATTGGGTGTGGTTATATATTGGATTAATCGCGATAATTTTTCAGCTTCGGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGCACTATTGGGTATGGAGATATTACTCCAAATAGTGCAGCGACTAAGCTGTTCTCAGTTTTGTTTGTGTTGGTGGGCTTTGGGTTTATTGATATATTGCTGTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTGAAGAGGGGCGTGCAGCGTGAATCTGGGAAATCCTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCTTAGGTGTTGTGATACTTTGTATAGGAATTGGCATGGGTGTTATGCATTTTGTTGAGGACTTAGGGTGGTTGGATTCATTTTATCTTTCAGTCATGTCTGTGACAACCGTCGGATATGGTGATCAGGCGTTCAAGTCGATGACGGGTCGTATTTTCGCTTCAATCTGGTTGCTTGTATCGACCCTTGCTGTCGCTCGGGCGTTCCTTTATTTAGCAGAGGCAAGAGTGGATAAGCGGCATAGGATGATGGCAAAATGGATACTTGGTCACGATATGACTGTCTCCGAGTTTCTTGCTGCTGATACCGACAACAATGGCTGTGTGAGTAGATCAGAATATGTGGTATACAAGCTGAAGGAGATGGGTAAGGTAACAGAGAAAGATGTCATGCAGATATCGAACAACTTCGATAGACTAGACACTGGCAAATGTGGGAAGATTACGTTGGCTGATCTCTTGCAAAATCATCACTGA 1275 44.55 MEKEPLLPYMSPRGKPPSLPQLYPLPENDEIILPMTPTEFKDRLIFGPSSSPQDASSAFDALTLSLASPRPSASSSRQDPSTPLDPKSQSPSQQGWLVDSKHSCHKSNLHRSKTAPAMAVINDINHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVVIYWINRDNFSASETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRESGKSYIIDVKKGRMRIRMKVALALGVVILCIGIGMGVMHFVEDLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGHDMTVSEFLAADTDNNGCVSRSEYVVYKLKEMGKVTEKDVMQISNNFDRLDTGKCGKITLADLLQNHH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 688150 691526 - CmaCh07G001330.1 Cma07g00133 297448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00133 424 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Cma07g00133 424 SUPERFAMILY EF-hand 362 421 IPR011992 -
Cma07g00133 424 MobiDBLite consensus disorder prediction 1 25 - -
Cma07g00133 424 Gene3D - 249 350 - -
Cma07g00133 424 MobiDBLite consensus disorder prediction 67 97 - -
Cma07g00133 424 SUPERFAMILY Voltage-gated potassium channels 140 232 - -
Cma07g00133 424 Pfam Ion channel 270 339 IPR013099 -
Cma07g00133 424 Pfam Ion channel 146 225 IPR013099 -
Cma07g00133 424 Gene3D - 136 236 - -
Cma07g00133 424 PRINTS Two pore domain K+ channel signature 182 210 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma07g00133 424 PRINTS Two pore domain K+ channel signature 302 311 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma07g00133 424 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 90 419 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma07g00133 424 MobiDBLite consensus disorder prediction 43 62 - -
Cma07g00133 424 PANTHER TWO-PORE POTASSIUM CHANNEL 3 90 419 - -
Cma07g00133 424 SUPERFAMILY Voltage-gated potassium channels 254 361 - -
Cma07g00133 424 Gene3D - 351 422 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01377 Cma07g00133 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00133 Cma-Chr7:688150 Cma18g00614 Cma-Chr18:5434263 4.39E-63 dispersed
Cma03g01377 Cma-Chr3:8737808 Cma07g00133 Cma-Chr7:688150 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00133 K05389 - csv:101220017 740.725