Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00152 ATGGCGAACCCCAATTCCGCCCCGATCGAACCCTGTGAAGGGGAGTTGTATTCGGTGTGGGCTCTTCCTCCAGAAGATGTAGCCACCAAAATCATTTCTCTGATGAGCAGCCTGAGATCCGAGTTTGGCGGCCCCGAATTTGAGCCGCATATCACCGTGGTTGGGGCAATTCGTCTCACCCCTCAGGATGCCCTCAATAAATTCCGATCGGCTTGCGAAGGGGTGAAGGCTTATCAAGCCACCGTGGATCAAGTTTCCATCGGAACCACCTTCTACCAGTGTGTTTTTCTCCTCATTCATCCCACCACCGAGGTGGTGCAGATCAGCTCACATTGCTGCGGCCATTTTGGTTGCAACAACTCCACCCCTTACATGCCGCATTTGAGCCTACTATATGCGAACATATCAGACGAAATGAAGAAGCGGGCGAAGGAAATAGCGGACAAACTGAATGAAGCCGTGAACGGCCTGAAAGTGCCACTCACTCGACTTGCATTGTACAAAACAGACACCGGCGATGAAACTCTGAAGTCGTGGGAGAAAATTGCAGAGCACGATCTTCCTTCAAGTAAGAAAACAACAAGAGGGGAGAGGATGTCTGATTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAACCGTCAAGTCACTTTCTGTAAGAGACGAAATGGACTGCTCAAAAAGGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAACCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGACAACAATTGATAGATACAAAAAGGCATCTTCAAATTCTCCAAACACCGGATCTACTTCTGAAACTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTGCGTGTTCAGATTGGTAATTTGCAGAACTCAAACAGGAACATGCTTGGTGAATCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGTCTTGAGAGCAAACTCGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATCGAGTACATGCGCAAAAGGGAGTTTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGTTGAGAGTGAAAGAAATGTGAACATGATGGGGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTCAACGGCTTACAGCACAATCAACAGTATCCACGTCAAGACAACATGTCTCTCCAGTTAGTATAA 1287 45.77 MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGAIRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGCNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPLTRLALYKTDTGDETLKSWEKIAEHDLPSSKKTTRGERMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKTTIDRYKKASSNSPNTGSTSETNTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREFDLHNNNQLLRAKIVESERNVNMMGGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMSLQLV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 778548 784789 - CmaCh07G001520.1 Cma07g00152 297467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00152 428 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 216 263 IPR002100 GO:0003677|GO:0046983
Cma07g00152 428 SMART madsneu2 207 266 IPR002100 GO:0003677|GO:0046983
Cma07g00152 428 PRINTS MADS domain signature 209 229 IPR002100 GO:0003677|GO:0046983
Cma07g00152 428 PRINTS MADS domain signature 244 265 IPR002100 GO:0003677|GO:0046983
Cma07g00152 428 PRINTS MADS domain signature 229 244 IPR002100 GO:0003677|GO:0046983
Cma07g00152 428 MobiDBLite consensus disorder prediction 187 209 - -
Cma07g00152 428 Pfam K-box region 289 377 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma07g00152 428 Coils Coil 330 350 - -
Cma07g00152 428 Gene3D - 219 302 IPR036879 GO:0003677|GO:0046983
Cma07g00152 428 Gene3D Cyclic phosphodiesterase 12 195 - -
Cma07g00152 428 PANTHER AGAMOUSB 201 422 - -
Cma07g00152 428 SUPERFAMILY LigT-like 16 187 IPR009097 -
Cma07g00152 428 ProSitePatterns MADS-box domain signature. 209 263 IPR002100 GO:0003677|GO:0046983
Cma07g00152 428 ProSiteProfiles MADS-box domain profile. 207 267 IPR002100 GO:0003677|GO:0046983
Cma07g00152 428 Pfam Cyclic phosphodiesterase-like protein 18 180 IPR012386 GO:0004112
Cma07g00152 428 ProSiteProfiles K-box domain profile. 293 383 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma07g00152 428 CDD MADS_MEF2_like 208 282 IPR033896 GO:0000977|GO:0045944
Cma07g00152 428 PANTHER MADS BOX PROTEIN 201 422 - -
Cma07g00152 428 SUPERFAMILY SRF-like 208 284 IPR036879 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00152 Cma13g00575 CCT
Cma03g01355 Cma07g00152 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00837 Cma-Chr1:4573034 Cma07g00152 Cma-Chr7:778548 1.28E-81 dispersed
Cma03g00854 Cma-Chr3:6379767 Cma07g00152 Cma-Chr7:778548 1.17E-44 dispersed
Cma03g01355 Cma-Chr3:8640127 Cma07g00152 Cma-Chr7:778548 4.43E-144 dispersed
Cma07g00152 Cma-Chr7:778548 Cma20g00254 Cma-Chr20:1241469 8.58E-98 dispersed
Cma16g00281 Cma-Chr16:1313922 Cma07g00152 Cma-Chr7:778548 2.09E-46 dispersed
Cma20g00961 Cma-Chr20:4867024 Cma07g00152 Cma-Chr7:778548 2.15E-19 dispersed
Cma14g00818 Cma-Chr14:4131116 Cma07g00152 Cma-Chr7:778548 1.47E-15 transposed
Cma13g00575 Cma-Chr13:5776852 Cma07g00152 Cma-Chr7:778548 7.48E-100 wgd
Cma03g01353 Cma-Chr3:8628530 Cma07g00152 Cma-Chr7:778548 3.67E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35323 PF07823 CPDase 7.80E-12 CL0247 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00152 K09264 - csv:101221430 408.297