Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00157 ATGGCTGAGATTTCAGGACCCAGCAACGGACACCACAGTGTTCCTCTCAACATCAAAGATGAACCCACACCCCTCACTGCCACAGAACCACTCGACTGTATCTCTGTTCCTTTCATTCAAAAGTTGATTGCGGAAGTTTTAGGGACATATTTCTTGATATTTGCGGGTGGAGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTCGTCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTCTATTCTGTCGGCCACATCTCTGGTGCTCATTTTAACCCTGCTGTCACCATAGCCTTCGCCACCACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAATTCTTGGATCAACATTGGCAAGTGGGACACTTCGGCTAATCTTTAATGGAGAAGAAGACCACTTTTCAGGGACTCTCCCAAGTGACTCATATGTGCAGACCTTTGTCATTGAATTCATCATCACATTTTACCTGATGTTTGTGGTCTCTGGCGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCCGTCGGCGCCACAGTGCTTCTCAATGTCATGTTTGCAGGGCCAATTACAGGAGCGTCCATGAACCCAGCCAGAAGCTTGGGGCCTGCAATAGTGTCAAGGCAGTTCAAAGGGTTGTGGATATACATCGTGGCTCCCATTTTGGGGGCAATTTCAGGTGCTTTGGTCTACAACACCATCAGCATTCTTCTTCAAACCAATCAATCCAATTTCAAAGCTTCAACCAAATCACTCATGGCAGAGAGTTCAGCTTCCAACAATGAACGCCACAGTCATTCTATGAGTGTCGAAGATGATTCGGCATCCGATTGTGTCTCTGTACTTTTCATTCAGAAGTTGATTGCAGAGGTTATGGGGACATATTTCGTGATATTTGCAGGCGAAGCATCAGTGGTGGTGAATTTGAGCAAAGATGGAGTCATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGATCTATTCCGTTGGCCACATTTCCGGTGCTCATTTTAACCCTGCTGTCACCATATCATTTGCCATTACCAGAAGATTTCCATGGAGTGAGGTGCCTTCATATCTGGCGGCTCAAGTTCTTGGATCAACATTAGCAAGTTGGACACTTTGGCTAATTTTTAATGGAAAACAAGACCACTTTCCAGGAACTCTCCCAAGCGACTCATACATGCAGACCTTTGTCATTGAATTCATAATCACATTCTACCTCATGTTTGTGGTTTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTCGCTGTTGGTGCTACCGTGCTTCTGAACGTGATGGTTGCAGGGCCAATAACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGGCCTGCATTAGTGTTTGCACAATTCAAGGGATTATGGATTTACATGACAGCGCCTATTCTAGGAGCAATATCAGATGAGCTTCCAGTTACCAAGCATTTCTACTTCTGTATTATCAAAAGATATGGAAATGAACAAGTATTTGATGTCACATGA 1584 44.82 MAEISGPSNGHHSVPLNIKDEPTPLTATEPLDCISVPFIQKLIAEVLGTYFLIFAGGASVVVNLSKDKVVTFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQILGSTLASGTLRLIFNGEEDHFSGTLPSDSYVQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPILGAISGALVYNTISILLQTNQSNFKASTKSLMAESSASNNERHSHSMSVEDDSASDCVSVLFIQKLIAEVMGTYFVIFAGEASVVVNLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITRRFPWSEVPSYLAAQVLGSTLASWTLWLIFNGKQDHFPGTLPSDSYMQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMVAGPITGASMNPARSLGPALVFAQFKGLWIYMTAPILGAISDELPVTKHFYFCIIKRYGNEQVFDVT 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 798243 802408 - CmaCh07G001570.1 Cma07g00157 297472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00157 527 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 ProSitePatterns MIP family signature. 357 365 IPR022357 -
Cma07g00157 527 SUPERFAMILY Aquaporin-like 295 500 IPR023271 -
Cma07g00157 527 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 Pfam Major intrinsic protein 295 500 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 TIGRFAM MIP: MIP family channel proteins 304 500 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 PANTHER AQUAPORIN NIP2-1 3 252 IPR034294 -
Cma07g00157 527 PANTHER AQUAPORIN NIP2-1 266 502 IPR034294 -
Cma07g00157 527 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 SUPERFAMILY Aquaporin-like 34 253 IPR023271 -
Cma07g00157 527 Gene3D Glycerol uptake facilitator protein. 26 256 IPR023271 -
Cma07g00157 527 CDD MIP 300 500 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00157 527 Gene3D Glycerol uptake facilitator protein. 257 502 IPR023271 -
Cma07g00157 527 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cma07g00157 527 PANTHER AQUAPORIN NIP1-1-RELATED 3 252 - -
Cma07g00157 527 PANTHER AQUAPORIN NIP1-1-RELATED 266 502 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01348 Cma07g00157 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00358 Cma-Chr1:1782726 Cma07g00157 Cma-Chr7:798243 2.14E-90 dispersed
Cma07g00157 Cma-Chr7:798243 Cma11g01024 Cma-Chr11:5571213 4.67E-63 dispersed
Cma14g01679 Cma-Chr14:12521168 Cma07g00157 Cma-Chr7:798243 1.92E-37 transposed
Cma03g01348 Cma-Chr3:8618130 Cma07g00157 Cma-Chr7:798243 3.43E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00157 K09874 - csv:101219297 427.943