Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00178 ATGGAAGTTGCAAAGCTAAAGATGGTTCTGTTGCTGTTCGCCTTCATCTGGCTGGTTTCTGCTTCAGACAGTCATTTGTCTCCGAAAGGAGTAAACTATGAAGTGGCGGCTTTGATGTCAATGAAGAGTAGGATAAGGGACGAGCGGAGAGTGATGGAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGTTTATGGTTGCTTGCTCTACCGAGGGCTTTGTGGTTTCTCTTGAGATGCCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCACCTTCGGACAATGTTGTTGCAAAATAATGAGTTAACTGGTCCAATCCCAGATGACATAGGAGGACTTACAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGATTGTCGGAGGCATTCCAAGTTCTTTGGGGTTTCTTACTCATTTGAATTACTTGAAGCTTAGTGGTAACAAGTTAAGTGGACCAATTCCGGAATCTGTTGCAAATATCTCAGGGATTTATCAAATAATAATCTCAGTGGCCCAACTCCAAGAATACTTTCCAAAGAGTACAGGGAATAGATTCCTTTGTGCATCTTCAGAATCTAAAGTGTGTGGAGGAGTATCAAAACCAGTTAATGAAACTGGTTCGCCTCAGAAAGATAATAGCCATCATCACTTGGTTCTTTCCATAGCTCTATTTGTCAGTTTCACGCTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCAAATCCTACGTGCAGCAAGATTATGAATTTGATATAGGCCATCTGAAAAGGTTTACATTCCGTGAATTACAAAAGGCAACATGTAATTTTAGTCCCCAAAATATCGTGGGACAGGGTGGTTTTGGTGTAGTTTATAAAGGGTATCTTCCAAATGGGACATATGTTGCAGTGAAGAGACTGAAAGATCCAAATTATACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTTTGTATGGTTTTTGTATGACGCCACATGAAAGGCTGCTTGTTTATCCATATATGCCAAATGGGAGTGTCGCTGACCGCCTCAGAGATGCATGCCAAGAGAAACCATCGTTGAATTGGAACAGAAGACTGCGTATTGCCCATGGTGCAGCACGTGGACTTGTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTAAAAGCAGCAAACATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTTGGTCTGGCAAAGATGTTGGATAGAAGGGACTCACATGTTACTACAGCAGTTAGGGGCACAGTGGGGCATATCGCCCCCGAATACCTTTCAACTGGACAATCTTCAGAAAAGAGTGATGTTTTTGGGTTTGGCATATTGGTTCTGGAACTCTTAACTGGGCCAAAAGCAGTAGATGCTGGCAATGGTCGGGTGGTTCGAAAGGGAACGATTCTCGAATGGGTTAGAACGTTACATGAGGAGAAGAGGCTAGATGAGATGGTGGACAGGGATCTAAGAGGGTGTTTTGATGCAATGGAGCTGGACAAAGCTGTAGAATTGGCTCTGCAGTGTACTCAGTCGCATCCACAACTCAGACCAAAGATGTCCGAGATTCTGAAGGTTTTAGAAGGTCTTGTTGGAGAGTTGAGCCAAATCGAAGAATCACCAGGCGGAGCAGCAAGTCTTTATGAGGACAGAGCTCATAGTTTCTCCCGGAATTACAGTGATATTCATGAAGAGTCTTCATTCGTTGTGGAAGCCATGGAGCTGTCGGGACCTCGATGA 1842 43.81 MEVAKLKMVLLLFAFIWLVSASDSHLSPKGVNYEVAALMSMKSRIRDERRVMEGWDINSVDPCTWFMVACSTEGFVVSLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELTGPIPDDIGGLTELQTLDLSNNQIVGGIPSSLGFLTHLNYLKLSGNKLSGPIPESVANISGIYQIIISVAQLQEYFPKSTGNRFLCASSESKVCGGVSKPVNETGSPQKDNSHHHLVLSIALFVSFTLVVSVVLLVGWVHCYRSHLVFKSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNIVGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPHERLLVYPYMPNGSVADRLRDACQEKPSLNWNRRLRIAHGAARGLVYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKSDVFGFGILVLELLTGPKAVDAGNGRVVRKGTILEWVRTLHEEKRLDEMVDRDLRGCFDAMELDKAVELALQCTQSHPQLRPKMSEILKVLEGLVGELSQIEESPGGAASLYEDRAHSFSRNYSDIHEESSFVVEAMELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 859468 863148 - CmaCh07G001780.1 Cma07g00178 297493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00178 613 SMART serkin_6 288 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00178 613 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cma07g00178 613 ProSiteProfiles Protein kinase domain profile. 288 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00178 613 SUPERFAMILY L domain-like 33 192 - -
Cma07g00178 613 Pfam Protein kinase domain 291 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00178 613 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 613 - -
Cma07g00178 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Cma07g00178 613 SUPERFAMILY Protein kinase-like (PK-like) 270 562 IPR011009 -
Cma07g00178 613 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515
Cma07g00178 613 Gene3D Ribonuclease Inhibitor 31 206 IPR032675 -
Cma07g00178 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 613 - -
Cma07g00178 613 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Cma07g00178 613 Gene3D Transferase(Phosphotransferase) domain 1 364 570 - -
Cma07g00178 613 Gene3D Phosphorylase Kinase; domain 1 257 363 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01328 Cma07g00178 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00178 Cma-Chr7:859468 Cma12g00024 Cma-Chr12:93850 0 dispersed
Cma03g01328 Cma-Chr3:8548885 Cma07g00178 Cma-Chr7:859468 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68671 PF00069 Pkinase 3.50E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00178 - - mcha:111012268 1067.37