Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00182 ATGGCCGACCGGCCGGACACCGACAAGAAGACCGAGACTACCAAGAAGGACATGCCGGCTCTTCTTTTGGGCCGATACGAGATCGGGAAGCTCCTTGGTCACGGCACCTTCGCTAAGGTCTACCATGCCCGCAACATTAAAACCGACCAAAGTGTCGCCATTAAAGTTATCGACAAGGAGAAGATCCTCAAGGGTGGTCTAATCGCCCACATCAAACGCGAGATCTCTATCCTCCGCCGCGTTCGACACCCCAATATCGTCCAACTCTTTGAGGTTATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATATGTACGCGGCGGCGAGCTTTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTTGCTCGGAAGTACTTTCAGCAATTAATCTCCGCCGTTGCCTTTTGCCATGCGCGCGGTGTGTTTCATCGCGACCTTAAACCGGAGAATTTGTTGCTGGATGAAAATGGGAATCTTAAGGTCTCCGATTTTGGCCTTAGTGCCGTGTCCGACCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACACCGGCGTATGTTGCTCCGGAGGTTTTGACCCGGAAAGGGTACGAGGCCGCAAAGGTAGATATTTGGTCCTGTGGGGTTATTCTGTTTGTTCTGATGGCCGGCTATCTGCCCTTCCACGACCAAAATATTATGGCAATGTATAAGAAGATTTACAGGGGTGAGTTCCGTTGTCCGAGATGGTTTTCCCCGGAGCTAATTCGACTCCTATCTCGTCTTTTGGACACAAACCCCGAAACCCGTTTCACAATTCCAGAAATCACGGAGAATAGATGGTTCAAAAAGGGTTACAAGCATATCAAATTCTACATCGAAGATGATAAGGTTTGCAGCATTGAGGATGACCAAAACGATGTCGATATTATCGATTCCTCCTCGGATCAATCTCAATCCGAATCGGATTCCGAAATAATTGAGACCAGAAGAAAGGTTAGTACACTCCCAAGACCGGCGAGTTTGAATGCATTTGACATCATTTCGTTCTCGCCTGGATTTGATCTTTCGGGGTTGTTTGAGGACGGAGGGGAAGAGGCAAGATTTGTGTCCAGTGCGCCGGTGTCGAAGATCATATCGAAATTGGAGGAGATTGCAAAATTGGTGAGTTTCACGGTGAGGAAGAAGGATTGCAGAGTGAGTTTAGAAGGGTCGCGGGAAGGAGTAAAAGGGCCATTGACGATCGCAGCAGAGGTATTCGAGTTGACGCAGAAATTAGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGACAAGGCAGAGTATGAACAGTTCTGTAACGAGGAATTGAAACCGGCATTGTTGAATTTGAAGGTGGAGGTGGAGGACTCTGCTGCCGCTCCATCATCACATATACCATCAGATACTGAATGA 1425 48.28 MADRPDTDKKTETTKKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTDQSVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLTRKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYRGEFRCPRWFSPELIRLLSRLLDTNPETRFTIPEITENRWFKKGYKHIKFYIEDDKVCSIEDDQNDVDIIDSSSDQSQSESDSEIIETRRKVSTLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTQKLVMVEVKRKGGDKAEYEQFCNEELKPALLNLKVEVEDSAAAPSSHIPSDTE 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 871594 873018 + CmaCh07G001820.1 Cma07g00182 297497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00182 474 CDD STKc_SnRK3 25 279 - -
Cma07g00182 474 SUPERFAMILY Protein kinase-like (PK-like) 22 292 IPR011009 -
Cma07g00182 474 CDD CIPK_C 341 451 - -
Cma07g00182 474 Pfam NAF domain 337 393 IPR004041 GO:0007165
Cma07g00182 474 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Cma07g00182 474 PANTHER - 17 465 - -
Cma07g00182 474 MobiDBLite consensus disorder prediction 308 327 - -
Cma07g00182 474 ProSiteProfiles NAF domain profile. 335 359 IPR018451 GO:0007165
Cma07g00182 474 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 17 465 - -
Cma07g00182 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cma07g00182 474 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00182 474 Gene3D Kinase associated domain 1, KA1 338 455 - -
Cma07g00182 474 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00182 474 Gene3D Transferase(Phosphotransferase) domain 1 17 337 - -
Cma07g00182 474 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01326 Cma07g00182 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00182 Cma-Chr7:871594 Cma07g01230 Cma-Chr7:6791652 6.70E-180 dispersed
Cma20g00311 Cma-Chr20:1543218 Cma07g00182 Cma-Chr7:871594 1.29E-161 dispersed
Cma13g00599 Cma-Chr13:5887321 Cma07g00182 Cma-Chr7:871594 0 wgd
Cma18g00420 Cma-Chr18:2300342 Cma07g00182 Cma-Chr7:871594 0 wgd
Cma03g01326 Cma-Chr3:8539246 Cma07g00182 Cma-Chr7:871594 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68673 PF00069 Pkinase 1.20E-75 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00182 - - csv:101214053 839.721