Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00189 ATGGCTGAGGTTCACTGTAGCAACGCTGGTGGAATTAAGCTCTTTGGCACCGTCATCACTTTACAGACCAGAAGCATCAAGGAGGAGCCAGAGAAAGGTGGTGGGGGTGGTGGCGATCAACCAGAGATGAAGAGGCCGGAAAAAATAATTCCGTGTCCAAGATGTAAGAGCATGGACACCAAGTTCTGTTACTTCAACAATTACAATGTTAATCAGCCCAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCAGGTGGGGCGCTACGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAGCCAAGCCGCCGCTGCCTAATTGTCGAATCCTTTCCGGAGAGCTTCCCGAGGATTATGGGCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGATGCGGTGGAGGGGTGGCATCTCACGGTGGCAGAACAGGATTTCGCCCAAGTTTTCCCTCTCAAACGCCAGAAGATTCAACACGGTCAAACGTCTTGA 507 52.07 MAEVHCSNAGGIKLFGTVITLQTRSIKEEPEKGGGGGGDQPEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPEDYGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIQHGQTS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 896540 897046 + CmaCh07G001890.1 Cma07g00189 297504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00189 168 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Cma07g00189 168 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Cma07g00189 168 PANTHER CYCLIC DOF FACTOR 2 8 164 IPR045174 GO:0003700|GO:0006355
Cma07g00189 168 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 8 164 - -
Cma07g00189 168 Pfam Dof domain, zinc finger 48 103 IPR003851 GO:0003677|GO:0006355
Cma07g00189 168 MobiDBLite consensus disorder prediction 25 45 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00189 Cma13g00606 CCT
Cma07g00189 Cma18g00411 CCT
Cma03g01320 Cma07g00189 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00189 Cma-Chr7:896540 Cma14g00533 Cma-Chr14:2644659 1.27E-37 dispersed
Cma13g00606 Cma-Chr13:5932833 Cma07g00189 Cma-Chr7:896540 4.33E-52 wgd
Cma18g00411 Cma-Chr18:2242124 Cma07g00189 Cma-Chr7:896540 3.65E-51 wgd
Cma03g01320 Cma-Chr3:8520805 Cma07g00189 Cma-Chr7:896540 9.15E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35328 PF02701 zf-Dof 1.10E-31 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00189 - - cmax:111496951 344.739