Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00203 | ATGGGTTCTGGAGACTGGTTTAAGACAGTAATTCGCTTAAGGAAAGTAAAAACCAGCAGTTCAAAACATCCTAAGGAGAAATCAAATGCTTTGAAATCGAATAATCTGGAAAAAGATTCCTCGAAGGTTAAAAAGAGTGGTACCAATGGGAGCAACAAGTCTCTTGGGATGCCAATTGAAGACGTAGCTGCAGTTCGGATTCAGACTGCATATCGAGCTTATCGTGCCAGGAAAATTTTACGTCGCTTGAAAGGAGCTGTGAGACTGCAGAATCTGACTCAAGGCCACTCTGTTAGAAGGCATGCTACATCTACAATAAGTTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGAATGTGTATGGTGACTGAAGGACGCCTCAAACAAAAGAGATTGGAGAATCAACGAAAACTTGAGACTAAACTTCATGATATTGAGGTAGAGTGGTGTGGCGGTGCAGACACCATGGAGGAGATTCTTTCAAGGGTACACGAGAGAGAAGAAGCAGCTGTTAAGCGTGAACGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGACTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCTGCTCGTCCATGGGAGAGCCGCGTACCATCTAAGTTAGTTACTCCAAAGAAATCGACAATGAGACAATCAAGCAAAGTCGGTAAGAAAAGCTCTCCATCCCCAAAAGCAAGAGTTTTGGTTAAACCTCCTTCCCCTAATGGAAAATCAACTCCAAAGGCTCGAAGGTTGTCGTATCCAGCAACCGAAAAAACCGAGAAACTGGCTACAGAAGAGAAGGGCATCAAGAAAAGCGTTGAAGATGATGAAGCAAACACTAAGAGCGAAGAAACAACTTCCTAA | 939 | 43.56 | MGSGDWFKTVIRLRKVKTSSSKHPKEKSNALKSNNLEKDSSKVKKSGTNGSNKSLGMPIEDVAAVRIQTAYRAYRARKILRRLKGAVRLQNLTQGHSVRRHATSTISYLHSWSNIQAQIRARRMCMVTEGRLKQKRLENQRKLETKLHDIEVEWCGGADTMEEILSRVHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSKLVTPKKSTMRQSSKVGKKSSPSPKARVLVKPPSPNGKSTPKARRLSYPATEKTEKLATEEKGIKKSVEDDEANTKSEETTS | 312 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 940748 | 944037 | - | CmaCh07G002030.1 | Cma07g00203 | 297518 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00203 | 312 | MobiDBLite | consensus disorder prediction | 232 | 250 | - | - | |
| Cma07g00203 | 312 | MobiDBLite | consensus disorder prediction | 230 | 312 | - | - | |
| Cma07g00203 | 312 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
| Cma07g00203 | 312 | MobiDBLite | consensus disorder prediction | 278 | 312 | - | - | |
| Cma07g00203 | 312 | PANTHER | IQ-DOMAIN 9 | 1 | 285 | - | - | |
| Cma07g00203 | 312 | MobiDBLite | consensus disorder prediction | 16 | 55 | - | - | |
| Cma07g00203 | 312 | Gene3D | - | 60 | 106 | - | - | |
| Cma07g00203 | 312 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 285 | - | - | |
| Cma07g00203 | 312 | ProSiteProfiles | IQ motif profile. | 82 | 111 | IPR000048 | GO:0005515 | |
| Cma07g00203 | 312 | ProSiteProfiles | IQ motif profile. | 60 | 88 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00203 | Cma-Chr7:940748 | Cma16g00415 | Cma-Chr16:2072511 | 7.30E-74 | dispersed | |
| Cma07g00203 | Cma-Chr7:940748 | Cma10g00857 | Cma-Chr10:4163007 | 8.41E-47 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00203 | - | - | cmax:111497513 | 597.816 |