Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00203 ATGGGTTCTGGAGACTGGTTTAAGACAGTAATTCGCTTAAGGAAAGTAAAAACCAGCAGTTCAAAACATCCTAAGGAGAAATCAAATGCTTTGAAATCGAATAATCTGGAAAAAGATTCCTCGAAGGTTAAAAAGAGTGGTACCAATGGGAGCAACAAGTCTCTTGGGATGCCAATTGAAGACGTAGCTGCAGTTCGGATTCAGACTGCATATCGAGCTTATCGTGCCAGGAAAATTTTACGTCGCTTGAAAGGAGCTGTGAGACTGCAGAATCTGACTCAAGGCCACTCTGTTAGAAGGCATGCTACATCTACAATAAGTTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGAATGTGTATGGTGACTGAAGGACGCCTCAAACAAAAGAGATTGGAGAATCAACGAAAACTTGAGACTAAACTTCATGATATTGAGGTAGAGTGGTGTGGCGGTGCAGACACCATGGAGGAGATTCTTTCAAGGGTACACGAGAGAGAAGAAGCAGCTGTTAAGCGTGAACGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGACTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCTGCTCGTCCATGGGAGAGCCGCGTACCATCTAAGTTAGTTACTCCAAAGAAATCGACAATGAGACAATCAAGCAAAGTCGGTAAGAAAAGCTCTCCATCCCCAAAAGCAAGAGTTTTGGTTAAACCTCCTTCCCCTAATGGAAAATCAACTCCAAAGGCTCGAAGGTTGTCGTATCCAGCAACCGAAAAAACCGAGAAACTGGCTACAGAAGAGAAGGGCATCAAGAAAAGCGTTGAAGATGATGAAGCAAACACTAAGAGCGAAGAAACAACTTCCTAA 939 43.56 MGSGDWFKTVIRLRKVKTSSSKHPKEKSNALKSNNLEKDSSKVKKSGTNGSNKSLGMPIEDVAAVRIQTAYRAYRARKILRRLKGAVRLQNLTQGHSVRRHATSTISYLHSWSNIQAQIRARRMCMVTEGRLKQKRLENQRKLETKLHDIEVEWCGGADTMEEILSRVHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSKLVTPKKSTMRQSSKVGKKSSPSPKARVLVKPPSPNGKSTPKARRLSYPATEKTEKLATEEKGIKKSVEDDEANTKSEETTS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 940748 944037 - CmaCh07G002030.1 Cma07g00203 297518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00203 312 MobiDBLite consensus disorder prediction 232 250 - -
Cma07g00203 312 MobiDBLite consensus disorder prediction 230 312 - -
Cma07g00203 312 MobiDBLite consensus disorder prediction 22 44 - -
Cma07g00203 312 MobiDBLite consensus disorder prediction 278 312 - -
Cma07g00203 312 PANTHER IQ-DOMAIN 9 1 285 - -
Cma07g00203 312 MobiDBLite consensus disorder prediction 16 55 - -
Cma07g00203 312 Gene3D - 60 106 - -
Cma07g00203 312 PANTHER IQ-DOMAIN 5-RELATED 1 285 - -
Cma07g00203 312 ProSiteProfiles IQ motif profile. 82 111 IPR000048 GO:0005515
Cma07g00203 312 ProSiteProfiles IQ motif profile. 60 88 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00203 - - - cmax:111497513 597.816
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00203 Cma-Chr7:940748 Cma16g00415 Cma-Chr16:2072511 7.30E-74 dispersed
Cma07g00203 Cma-Chr7:940748 Cma10g00857 Cma-Chr10:4163007 8.41E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00203 Cma_Chr07 FPKM 25.388611 28.039318 41.216652 40.60796 21.674599 19.552801 21.291901 49.440552 52.910847 49.916714