Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00209 ATGGCTTCCTCAAACAGACACTGGCCTAGCATGTTCAAGTCCAAACCCTGCAATTCTCACCACCAATGGCAGCATGACATCAACCCAAATCTCTCTTCTTCAACTGCCACTTGCCTCAGATCTGCTCCTTATGCTACAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCANAACCAAGATGGAATCCAAAACCAGAACAAATTCGGATTCTTGAAGCAATTTTCAATTCCGGGATGGTGAATCCACCAAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAGGAATATGGACAAGTGGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAGTCAAGAAGCAAAAGCAAACTCCGCCATATCCAAAACTCCAAATCCAATAATAATCACAATTCCCAAACCACCACTACTCCTTTACCATCTCCTATTCCTCCCATCGCCACTGCCACCATCACCGCCGCCGCCGCCGCCACAACTTGTTCTTCCTCTTCTTCTTCCGACAAGTCTTCTCCAATATCAGCACCCATCAAAACTTTTAGCTCCAATTCAATGACCCAGAACTACCTTCCACAACTCACCAAGGAGCTCTTGCCTGAACCCTTTTTCTTCCCGGTTTCACAGACCGGCGGCGGCGGCGGCGGTGGAAGCTCTAATTTGAGTCAAGGGTTTTGCTTGTCGGAGCTTTGTAGTGTAGTGCAGCAAGTGCCTGAAGATGGGGTTGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGATTATGAACCCAACTGAGGCTTCAAAAAAAGATTTGGATGAGGACAAGATCACGGTGAAGTTGCCGCCTCCGTTCATGAATTATCATCCTGTTTTCACTCCCTCCACTGATAATATTCTTCCACCAACCACTATGTCCACCGCCCTCACCACTCTTCCATCTCCTTCCCATACAATTCATCAAGGTGTCGGCGAAGTTTATGGATTAGGTCAAAGCTGTGTAGGGATGTCAACAGTGTTCATCAATGGTGTGGCGTTCGAGGTGGGTTCTGGTGCGTTCAATGTTCGGGAGGCCTTTGGTGATGAAGCTGTTCTGATTCACTCCTCTGGTCAGCCTGTTATCACTAATGAATGGGGCCTCACTCTCCACTCACTCCAACATGGCGCCTCTTATTATCTTATATAA 1164 46.82 MASSNRHWPSMFKSKPCNSHHQWQHDINPNLSSSTATCLRSAPYATVGGCEERSPEPXPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKSKLRHIQNSKSNNNHNSQTTTTPLPSPIPPIATATITAAAAATTCSSSSSSDKSSPISAPIKTFSSNSMTQNYLPQLTKELLPEPFFFPVSQTGGGGGGGSSNLSQGFCLSELCSVVQQVPEDGVVGPCTSLLLSEIMNPTEASKKDLDEDKITVKLPPPFMNYHPVFTPSTDNILPPTTMSTALTTLPSPSHTIHQGVGEVYGLGQSCVGMSTVFINGVAFEVGSGAFNVREAFGDEAVLIHSSGQPVITNEWGLTLHSLQHGASYYLI 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 966712 968502 + CmaCh07G002090.1 Cma07g00209 297524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00209 387 SMART HOX_1 56 123 IPR001356 GO:0003677
Cma07g00209 387 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677
Cma07g00209 387 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 387 - -
Cma07g00209 387 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 387 IPR044557 GO:0003700|GO:0050793
Cma07g00209 387 MobiDBLite consensus disorder prediction 118 150 - -
Cma07g00209 387 SUPERFAMILY Homeodomain-like 56 121 IPR009057 -
Cma07g00209 387 CDD homeodomain 59 119 IPR001356 GO:0003677
Cma07g00209 387 Gene3D - 59 126 - -
Cma07g00209 387 MobiDBLite consensus disorder prediction 123 139 - -
Cma07g00209 387 Pfam Homeodomain 59 117 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00209 - - - bhj:120074379 563.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g01305 Cma07g00209 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00070 Cma-Chr6:396091 Cma07g00209 Cma-Chr7:966712 7.00E-17 dispersed
Cma07g00209 Cma-Chr7:966712 Cma14g00454 Cma-Chr14:2171571 5.66E-15 dispersed
Cma03g01305 Cma-Chr3:8445997 Cma07g00209 Cma-Chr7:966712 4.66E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g165 . . Bda02g00504 . . Bpe01g00455 . . . . Cma03g01305 Cma07g00209 Car03g01165 Car07g00176 . . Cpe10g00163 Bhi03g00342 . . . . . . Cla01g02289 Cam01g2401 Cec04g2047 Cco04g2125 Clacu01g2422 Cmu01g2286 Cre04g1954 . . Cone6ag0982 Cone9ag0982 Lsi01g00272 Csa06g03668 . Cme08g00256 . Blo14g00416 . . . . . . . Cmo03g01301 Cmo07g00209 . . . . Cpe19g01046 . . . . . . . . . . . . . . . . . Chy02g00262 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008426 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35331 PF00046 Homeodomain 4.90E-14 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00209 Cma_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0