Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00209 ATGGCTTCCTCAAACAGACACTGGCCTAGCATGTTCAAGTCCAAACCCTGCAATTCTCACCACCAATGGCAGCATGACATCAACCCAAATCTCTCTTCTTCAACTGCCACTTGCCTCAGATCTGCTCCTTATGCTACAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCANAACCAAGATGGAATCCAAAACCAGAACAAATTCGGATTCTTGAAGCAATTTTCAATTCCGGGATGGTGAATCCACCAAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAGGAATATGGACAAGTGGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAGTCAAGAAGCAAAAGCAAACTCCGCCATATCCAAAACTCCAAATCCAATAATAATCACAATTCCCAAACCACCACTACTCCTTTACCATCTCCTATTCCTCCCATCGCCACTGCCACCATCACCGCCGCCGCCGCCGCCACAACTTGTTCTTCCTCTTCTTCTTCCGACAAGTCTTCTCCAATATCAGCACCCATCAAAACTTTTAGCTCCAATTCAATGACCCAGAACTACCTTCCACAACTCACCAAGGAGCTCTTGCCTGAACCCTTTTTCTTCCCGGTTTCACAGACCGGCGGCGGCGGCGGCGGTGGAAGCTCTAATTTGAGTCAAGGGTTTTGCTTGTCGGAGCTTTGTAGTGTAGTGCAGCAAGTGCCTGAAGATGGGGTTGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGATTATGAACCCAACTGAGGCTTCAAAAAAAGATTTGGATGAGGACAAGATCACGGTGAAGTTGCCGCCTCCGTTCATGAATTATCATCCTGTTTTCACTCCCTCCACTGATAATATTCTTCCACCAACCACTATGTCCACCGCCCTCACCACTCTTCCATCTCCTTCCCATACAATTCATCAAGGTGTCGGCGAAGTTTATGGATTAGGTCAAAGCTGTGTAGGGATGTCAACAGTGTTCATCAATGGTGTGGCGTTCGAGGTGGGTTCTGGTGCGTTCAATGTTCGGGAGGCCTTTGGTGATGAAGCTGTTCTGATTCACTCCTCTGGTCAGCCTGTTATCACTAATGAATGGGGCCTCACTCTCCACTCACTCCAACATGGCGCCTCTTATTATCTTATATAA 1164 46.82 MASSNRHWPSMFKSKPCNSHHQWQHDINPNLSSSTATCLRSAPYATVGGCEERSPEPXPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKSKLRHIQNSKSNNNHNSQTTTTPLPSPIPPIATATITAAAAATTCSSSSSSDKSSPISAPIKTFSSNSMTQNYLPQLTKELLPEPFFFPVSQTGGGGGGGSSNLSQGFCLSELCSVVQQVPEDGVVGPCTSLLLSEIMNPTEASKKDLDEDKITVKLPPPFMNYHPVFTPSTDNILPPTTMSTALTTLPSPSHTIHQGVGEVYGLGQSCVGMSTVFINGVAFEVGSGAFNVREAFGDEAVLIHSSGQPVITNEWGLTLHSLQHGASYYLI 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 966712 968502 + CmaCh07G002090.1 Cma07g00209 297524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00209 387 SMART HOX_1 56 123 IPR001356 GO:0003677
Cma07g00209 387 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677
Cma07g00209 387 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 387 - -
Cma07g00209 387 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 387 IPR044557 GO:0003700|GO:0050793
Cma07g00209 387 MobiDBLite consensus disorder prediction 118 150 - -
Cma07g00209 387 SUPERFAMILY Homeodomain-like 56 121 IPR009057 -
Cma07g00209 387 CDD homeodomain 59 119 IPR001356 GO:0003677
Cma07g00209 387 Gene3D - 59 126 - -
Cma07g00209 387 MobiDBLite consensus disorder prediction 123 139 - -
Cma07g00209 387 Pfam Homeodomain 59 117 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01305 Cma07g00209 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00070 Cma-Chr6:396091 Cma07g00209 Cma-Chr7:966712 7.00E-17 dispersed
Cma07g00209 Cma-Chr7:966712 Cma14g00454 Cma-Chr14:2171571 5.66E-15 dispersed
Cma03g01305 Cma-Chr3:8445997 Cma07g00209 Cma-Chr7:966712 4.66E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35331 PF00046 Homeodomain 4.90E-14 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00209 - - bhj:120074379 563.533