Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00212 ATGAAAATAAGTTATAGGTATAGCGCGTGTAGCATAAAGCAAGAGAACATGCGGGGGTGGAGAACCCTCGACTTTTACGCGGGTGCTGCTGCTCCTTGTCGTCTCAGCCTTTCATCGTACTTTACACCCGCCCGCCCGCCTGCTTCCATTCGCTCATCTCACCTTTTACTCACGCGCCACTGTCCACATGTTCGATATCCAGAGCGCTACCGTGGCAACAACCTCGAAAGCTCCAACGAGGATTCGTATTTGGATGTGGTTGTCATGGTACTCCCGGTACTGAAGCTTGGAACGCTCGTGTTGAAAACTCTGAGCAAGCCACTCGGTAATAGGCTCAAGAAGCAAGCTGCGTTGCACCCCAGATTTAGGCAGTCTATCATCAATGTCGCCCAGATTAACCATCGGATGTCAACACAAATGCAAAGACGCATATATGGTCATGCAACTGATGTAGAAATTCGCCCTCTGGATGAGGAGAAAGCAGTTCAGGCTGCTGTTGACCTGATTGGCGAGGTTTTTGTTTTCTCGGTTGCAGGAGCAATCGTGATATTTGAGGTTCAGAGAAGTGCTAGATCAGAAGCCAGAAAAGAAGAAGTACGCAGACAAGAAATGGAGGCACTGAGGCAGAGAGACGAAAGCTTATCAACAGAATTGGAACTTCTGCAGCAAAAACTAGTAGAACTGGAACAACATGCCAGAGGACGAGGTCTCAGTGGTGTCCTTGCACTTTCTTGCTCCTTATTGTGGGAGGTTCAAGCCCTGTTCAGAGCTAGGGCTTTCGATTCGGCTGCGAGTTCCTCGCATTCGAAGACCAGTTGCAAGTCGGCTTCCCACAAGCTCTTTAAGGATAAGGCAAAGAACCGGGTCGATGATCTGCAAAGCATATTTGTAGATTTGCAATATGCAAGGAAAGAGAGCCGCAATGTTGATGTGGCAGTGCTCGAGGAACAAGTCCATCAGATGCTTCGTGAGTGGAAAGCAGAGCTGAACGAGCCCTCTCCAGCATCCTCTTTGCAACAAGGTGGAAGCCTTGGGTCATTTTCATCGGACATTTGTCGATTGCTACAACTTTGCGAGGAGGATGATGATGCATCTAGTCCATTAGCTGCTCCTAAACCAGAACCCAATGAACAAAATCTGCAGGGTGGAGATACTATGGCAGTTCAAGAGGGATTTAACGTGAACCGTGTACACCAAGAACCAAGCTTCCCTCTAGTTGATCAGTGCAAGAACTCCCCTTCAGGAGTTCATGGTTTGGCTATGAATAACTTGGAAGGAGCCACATATTTGGAGTGTCATCAGCTTGATTTACATCAAGGCAGTGAACACAACTTTTACTCATTCCTTAATGGTAGAGGTTTGTGTGGGGCGAGTGAAATTCCTCATGTTTCCAGCTACTGTCCCAGCATATGTCCTCCTCCTGCTGCTTTCTTAGGCCCTAAATGTGCGCTTTGGGATTGCCCACGACCTGCCCAAGGGTTGGATTGGTGTGAGGATTACTGCAGCAGTTTTCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGCATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTACGAAGGCACAAGGAAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACGGCTAAATCCCCATGGAATGCTCCTGAGCTATTTGATCTGTCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGACAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGGAAGCAGAGGTCATTGCCAGATTATAGTGGACGTGGTTGGCATGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCGTTGAACCACTTTGAGTGGCATCTTTATGAGTATGAAATCAATAAGTATGATGCCTGCGCTTTGTATAGATTGGAGTTGAAACTCGTTGATGGGAAAAAAAGTTCCAAGGCAAAGGTAACAAATGATTCGGTTGCCGATTTACAGAGACAAATGGGGAGACTGGCTGCTGAGTTTCCTGATAATAAACGCTTTATGAAGGGGAGGACCAAAATTAACACAAAAGTTGGTGTTGGAAATGTTTACTCATCAGCAAATAGAGTCATGCCACCCAATGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGTGGAGAATTTGAGCGAATATTACCCTACGTAG 2244 46.57 MKISYRYSACSIKQENMRGWRTLDFYAGAAAPCRLSLSSYFTPARPPASIRSSHLLLTRHCPHVRYPERYRGNNLESSNEDSYLDVVVMVLPVLKLGTLVLKTLSKPLGNRLKKQAALHPRFRQSIINVAQINHRMSTQMQRRIYGHATDVEIRPLDEEKAVQAAVDLIGEVFVFSVAGAIVIFEVQRSARSEARKEEVRRQEMEALRQRDESLSTELELLQQKLVELEQHARGRGLSGVLALSCSLLWEVQALFRARAFDSAASSSHSKTSCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRNVDVAVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQGGDTMAVQEGFNVNRVHQEPSFPLVDQCKNSPSGVHGLAMNNLEGATYLECHQLDLHQGSEHNFYSFLNGRGLCGASEIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGLDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSTKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKSSKAKVTNDSVADLQRQMGRLAAEFPDNKRFMKGRTKINTKVGVGNVYSSANRVMPPNGTYDYMLHAQYDYLVENLSEYYPT 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 978085 988464 - CmaCh07G002120.1 Cma07g00212 297527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00212 747 Pfam Optic atrophy 3 protein (OPA3) 94 214 IPR010754 -
Cma07g00212 747 PANTHER TRANSCRIPTION FACTOR VOZ1 268 746 IPR039277 GO:0006355|GO:0048578
Cma07g00212 747 MobiDBLite consensus disorder prediction 363 382 - -
Cma07g00212 747 PANTHER TRANSCRIPTION FACTOR VOZ1 268 746 - -
Cma07g00212 747 Coils Coil 204 231 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01299 Cma07g00212 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00196 Cma-Chr2:876295 Cma07g00212 Cma-Chr7:978085 2.79E-170 dispersed
Cma03g01300 Cma-Chr3:8428355 Cma07g00212 Cma-Chr7:978085 1.09E-81 dispersed
Cma07g00212 Cma-Chr7:978085 Cma20g00581 Cma-Chr20:2770379 6.41E-174 dispersed
Cma03g01301 Cma-Chr3:8431013 Cma07g00212 Cma-Chr7:978085 0 transposed
Cma03g01299 Cma-Chr3:8424969 Cma07g00212 Cma-Chr7:978085 4.00E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35332 PF07047 OPA3 3.40E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00212 - - csv:101219536 929.472