Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00214 ATGGCTGCTCTTATCGATCTCAATACCACTGAAGAAGACGATGCTCCCTCCTCTGCTGCTTCCTCTGCTTCCTCTTCCTCTGCTTCTGCTTTAACCTCCTCCCCTTCGCCTTCTCTCACCTCCTCAATTTGCTTGGAGCTGTGGCATGCCTGCGCTGGACCTCTGACGTCCTTGCCCAAGAAAGGGAGTTTGGTTGTGTATTTTCCACAGGGCCACTTGGAGCAGATGCAAGAGTTCCCTGCCACGGCGGCCTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCACGCTGAGGCTGGGAGTGACGAGGTCTATGCTCAAGTCTCATTGTTTCCTGAAAACGAGCCCATTGAACACAAAATGCAGGAAGAGATGACCAATGACAGTGAGGGGGAGGATTTTGAAGGAAGTGAGAAGACCACAACCCCCCACATGTTCTGCAAGACACTTACTGCTTCAGACACTAGCACTCATGGAGGCTTCTCCGTCCCCAGACGTGCAGCTGAGGATTGCTTCCCGCCATTGGATTATAGCCAACAGAGGCCTTCACAAGAGCTAGTTGCAAAGGATCTCCTTGGGATAAAATGGAAGTTTAGGCACATATATCGCGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCATTCGTGAACAAGAAAAGGCTTGTTTCTGGTGATGCAGTGCTGTTTCTTAGGGGCAACGATGGGGAATTACGACTGGGGATTCGACGAGCTGCGCAGCTTAAAGGCAGTTATGCCTTTTCTAACATTTGCAGTCAGCAACTCAACTCTAGTAGTATCATGGATGTGGTTAATGCTATATCTTCAAAAACTTCCTTTAGCGTATACTATAATCCCAGGGCTACCTCTTCACAGTTTGTCTTGCCTTTCCACAAGTTCTTGAAGAGCATTAATCATTCCTTCTCTGCTGGAATGAGGTTCAGCTTGAGTTTTGAAACCGACGATGCTGCAGATCGAAGATGCACTGGACGTATAACTGGAGTTGGAGATGTGGATCCTATCAGATGGCCTGGGTCAAGGTGGAGGTCCCTTGTGGTGAGGTGGGACGATGTCGAAACTAAAAGACATGGCAGGGTTTCCCCGTGGGAGATCGAGCCCTCAGGTTCTGTTTCTGTGGCTAGCAACTTGGTTCCACCGGGTTTAAAAAGGACCAGGATTGGGCTCTCTCCCACAGAACTAGAGTTTCCAGCTCCAAATGGAATTGGAGCATCAGACTTTGGGGAATCATTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTAATGGCGATGACAACGTTCGTCATCCACCGGAGAAAAGGAGATCATTTCCTGGTGTACACGGTTCGGGGATAGCTCTAATGAGAAATGGTCCAAGAATCCCAGTTACTAACTCTGAAACTCCCTCCCGGGGTTTCATGTTTAATGAATCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATATATCCGAGTCCATTTTTTGGAATAGCCACTGCCACCAATGAAGTCAAGGCAAGTGATGGTTATGGTCCTGTGGACAGTGTTCCACTGTCTAGATCTAAAGATGGATGGCCCATGACTATGCAGAGTGAAAATTTCCTCACACGCTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCATCTGTGTTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCATATAACCGTGGCAATTTCACAGAACAGAGGACTATGAACAAGAGTACCTCCCATAATTCTGGGACAGCTTTTATGACTGACCACAGCACAAGCACTGAAGTCCCACAAGGCATGCGCCCCGCTTCATTGGGCGTGCAGAAGCAGCTCGGCCTATCACATCCTTCTACAACAGAACCAGCGTTTACTGGCAATAAAGCTGGATGTAGATTGTTTGGTTTTTCATTAACAGAAGGAAAGAATGTTGGGAATACAGACAAGGCTTCGCCAGCAACAACTCCAATTAATGCAGGAACTACCTCTGTGTTGTCCTCCAATAGTGGACTACGTTGTCCTTTGAAGTCTCCACTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTGTCCAGTATCGTTTTGCAAATTGCAGTACCTACTACTGA 2169 47.49 MAALIDLNTTEEDDAPSSAASSASSSSASALTSSPSPSLTSSICLELWHACAGPLTSLPKKGSLVVYFPQGHLEQMQEFPATAAYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEPIEHKMQEEMTNDSEGEDFEGSEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKGSYAFSNICSQQLNSSSIMDVVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSLVVRWDDVETKRHGRVSPWEIEPSGSVSVASNLVPPGLKRTRIGLSPTELEFPAPNGIGASDFGESLRFQKVLQGQEILGYSTPINGDDNVRHPPEKRRSFPGVHGSGIALMRNGPRIPVTNSETPSRGFMFNESFQFHKVLQGQEIYPSPFFGIATATNEVKASDGYGPVDSVPLSRSKDGWPMTMQSENFLTRSSIPSVQVSSPSSVFMFQQSMVPVQSFNSYNRGNFTEQRTMNKSTSHNSGTAFMTDHSTSTEVPQGMRPASLGVQKQLGLSHPSTTEPAFTGNKAGCRLFGFSLTEGKNVGNTDKASPATTPINAGTTSVLSSNSGLRCPLKSPLMSKVVGSNCTKGAVQYRFANCSTYY 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 992555 996604 + CmaCh07G002140.1 Cma07g00214 297529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00214 722 Gene3D - 314 388 - -
Cma07g00214 722 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Cma07g00214 722 MobiDBLite consensus disorder prediction 11 36 - -
Cma07g00214 722 SUPERFAMILY DNA-binding pseudobarrel domain 145 257 IPR015300 -
Cma07g00214 722 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 713 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma07g00214 722 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Cma07g00214 722 MobiDBLite consensus disorder prediction 1 36 - -
Cma07g00214 722 CDD B3_DNA 149 251 IPR003340 GO:0003677
Cma07g00214 722 SMART B3_2 151 253 IPR003340 GO:0003677
Cma07g00214 722 Gene3D - 149 253 IPR015300 -
Cma07g00214 722 MobiDBLite consensus disorder prediction 455 476 - -
Cma07g00214 722 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma07g00214 722 PANTHER AUXIN RESPONSE FACTOR 3 34 713 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01298 Cma07g00214 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00881 Cma-Chr2:5229657 Cma07g00214 Cma-Chr7:992555 5.88E-153 dispersed
Cma07g00214 Cma-Chr7:992555 Cma20g00475 Cma-Chr20:2288731 2.44E-147 dispersed
Cma03g01298 Cma-Chr3:8415430 Cma07g00214 Cma-Chr7:992555 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35333 PF02362 B3 1.90E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00214 K14486 - csv:101220018 1169.07