Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00219 ATGGAAGCTGCTGCTTCCGACGGCGGAAATCACAACCTGAATAATGATAATATTAACAAAATTAGTAACTCAAGTGAGGGTCTTAGCAGGCCCAAGCGCCAGATGAAGACTCCATTTCAGCTGGAAACCCTCGAGAAGGCCTTTGCTTTGGAGACATATCCATCAGAGTCGACGAGGGCTGAGCTGTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAAGACAAGAAGGAACCGGCGAAGAAACCACGAAATGTGGTACCGGCGTTTCCTGATTCTCCCATTGACGAATTGAGAGTGGTAGCCGAGCCGGGTAGTGATTACGCTTCAGGGTCGGGCTCGGGTTCAAGTCCATTCGGTGATGTTGGGCTGCGTAATGTGGCGTCTGGAAGTGGTGGAGACGATATGCTGATGACGAGAAGGTATTACGAACCTTCAAGGTCCATTATGGAACTTAGAGCCATTGCTTGTGTGGAGTCGCAGTTAGGCGAGCCATTGAGGGAGGACGGACCTATTATTGGGATTGAATTTGATTCGCTACCACCTGATGCTTTCGGAGCACCTCTAGCAGTGGCTGAACAGCAGAAGCGATCTGGACATTTGTATGGGGACAAATATGATCAGAGGGATGCAAAATCAAATAAAGCAACTGCAAGGGCATTCCCGGAATATCCATTTATGCCAGACCAGTCTAGAATTAGAGCTGATGCTTATGGACCAGTTGCCCAATCACATTATCCAGATTCATTAGTCGAGGTTTCAGCAGCCAGGAATCCATCATTTTTGCTTGGTCGTGAACAGTTGAATAGGAGCCATAATTATCATGGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGCAGCAAGGAATTGCAGTTCCATCTCCTGCCGATGATAACACATTTGTTCCTGCAAGTATCAGGAATCCGATTGTTGTACAAGAAGATTCGTATATGTTACCTGATGGGCAAGTTTTCCCAAATGATGTCATCATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAACAAAGAAGCTGAAGCCCATGAGATAAGAATGCGAAAAGAGCTTGAGAAACAAGACAATTTGAGGAAAAAGAGTGAAGAGCGAATAAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAGGAAAGAAGAGGAGAGGTTACAGCGAGAAAAACAGCGAGAAGTAGAAAGGTTGAAGCGTGAGGAAAGACGTGAACTTGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAAGGCTGAGAAGAGGAGGCAAAAAGAAGCTATTCGCAAGGAAAAGGAAGCAGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCACGTAGAATTGCTCGTGAGTCTATGGAACTTATTGAGGATGAACAGCTTGAACTGATGGAAATAGCAGCTGCAAACAAAGGATTATCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTCGAGTCTTTCCGAGATTATCTAGGTGCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCAGCATTCAGCCTTGGATCAATTCAGAGGAGAATATTGGTAACCTTCTCATGGTAGAGCCTCCTTCTTTGTATAGTTCAACGAGCATTTTAAGAGTTATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTATGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGTCTTCTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTGCAGGATTGGGAATGAATCAGAATGGTGTTGCCAACACTGGAGGTGGACATCCACAAATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAACATTTAAACCCATTAACATGGCCTGAAATATTTCGACAACTAGCATTATCAGCTGGATTTGGACCTCAGTTAAAGAGGAGTTTGGCATGGTCTGAAATGCGTAGCAATGATGAGGCTAAATGTGGTGAGGATGTAGTTTCTACTCTTCGCAATGGTTCAGCAGCTGAAAATGCATTTTCTATCATGCAAGAGAAGGGTTTGTTAGCTCCTCGAAGATCTAGGCATCGGCTCACTCCTGGAACTGTCAAATTTGCTGCTTTCCATGTCCTTTCACTAGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACAAGCAGAACACCAGAGGCTTCTATTTCTGTTGCTTTGACGAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCTACATATCGTGTACGATCTCCCTATAGGAAGGATCCAGATGATGCTGAGGACTTACTTTCAGTAGCCAGAAAGAAGATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAAGTTGATGATGTAGCGATGACATCTTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTAACCTGGGAGTTGAGAATGAAAACTCATGTCATGATATTGATGGAAATCCACAAAATGAGATTGCCAAAAATATACCATCGTCTCCCCTAAGTGGCTCCAAGGACACAAAATATTTAAATATACCTACAGAGCAACAAGCTGCTGTTGATGGGACTACTGTTACTGATCTTGATCAAGAAAATATGGAGATTGATGAGAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGGTTGAATGCCCTTATCGCCTTAACCAGCATCGCAAATGAAGGAAACTCAATTCGCCTTGTTCTTGAGGATCGCTTGGAAGCCGCGAATGCTGTTAAGAAGCAAATGTTGGCTGAGGCTCAGATTGATAAATCTCGCCTGAAAGAAGAAATCATTACTAAATCAGATTTTCCAATTCACATTGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCGCTATGGAGGATGGCCAAAGCCCTTTTCCTGTTGCTGACAGTCAGAACAATGAAACAACCCTTTGCAATGCAGAAAACCTCGGTAGTGTGCCTAATGAGAGGGCTACTTTAGTGCCAGATTTTTTCCCAGTCCCTGATAACTTTTTGGCTCAACAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTGAAATCTTATATTGCCCAGAGAGCAGAAGAAATGTACACTTACAGGTCCTTGCCTCTAGGTCGAGATCGTAGGCGTAATCGATATTGGCAATTTGTTGCATCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTAGAAATGTATGATGGAAAATGGATGCTTATTGATTCTGAAGAGGGCTTTGATGCTCTTTCAATGGCTTTGGACACACGTGGGGTTAGAGAATCACACCTACGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTAGGAGGAATCTTCAGTGTGTCAATGTGATGGTTCAAAGTCGAATTACTCCTAAAAATGAAAACGATGAATCAAGCTCTAGTCCTGATTGCAATGCCAGTTTTAACAGTCCTAGCAGCACTGTTTGCGGTTTAAATTTGGATACAACGATAACATCATCTTCATTTAGAATTGAGCTCGGGAGAAATGAAAATGAAAAGAAGGCTGCATTTAAAAGGTATCAAGACTTGCACAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACATTATGTGCCATGGAGTTTGGAGAAAAAAGGTGCATGCCGCTGTTGGATATTTGCGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGCTCTTCGTGCCATCAAACTTATGGCACTAGTGAGAACGATACTAATTTTCTGGAACACGAATGTCACTGTACGAGGGAAAGGAAGTCTTACAATTGGGATACACATGCATTAGATGCATCTCTTCCCCTCAAAAGTAGATTGCTCAAGGCCCTCTTAGCTTTCATTGAGGTACATGTTCCTTCAGAAGCTTTTCAATTGTTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCTTCAACTATTGAGGAGCTACTACAGATTTTGACCCTGTTTGAAAGTGTAATTAAGCGAGACTTCCTAAAATCAGACTTTACTACAACAGACGAACACCTGAGCTCATGTTCCATCTCTAGGAATGTTATACATGACGCAGCAGATGTTGGGTCTGTTCTTACATTACCATGGATTCCACGGACTAGCGCAGCTGTTGCTTTAAGGCTTTGTGAGATAGATGTATCAATTTATTATATCGGGTGTGAGAAACCAGAGCCTGACCAGTATAAGGAAATCGGAGAACATGTAAACTTTCCCAGTAGATTTGTCCAGATTAAGAATGAAAACGAACTGGACTATGATGGTCTAATGAAGCAAGAAAACTTGGCTGATCCAAAAAATTTAAGGAACAGCTACAAACGTGATCGAAGGAGTCGAGATCATGGACGTCGTAAAAGGTGGCAGAAAAAAGTTAATGGTTCCAAATCTAGCCGTGTCCGTCCAAATGTGAAGAGTAATGAGAAGATGAATGAAGAACAGAGGGAACTGGGACAAGGAATGCAGGTTTTGGGGGTACGGGGTCCCCGTACTGTAAGGAAGCGAAGGGCTGAGAATAGCATTCCAGATGAAGGATTGTTGGGGCTCGTGCCTAGTAGTAGTACTCGGAATATAGATGAATCTCCAAAAGACTATATTGGGAAATGGGAGGATGAAAAAATGGATAGGTTCGTGGATATGGAAGATGATGAGAATGTGATGGAAGATGAAGAGAACGAAGAGGATGAAGAGAATGTAAACAACGTAGAACCAATGGACTCAGACGAGGATGCGCAGGAAGTTGGATATGAGCAAGGGAGTTGGGAGTATGGTATTGACAATGGCACCTCCAACAGATGGAATGGTGATTTAGGGGTGGCTAGTGATGAGGAGGATGTGGAGCTATCTGAGGACTACAATGGCACTGAAGAGGGGGGAAATGATTTTGGGGAGGAAGAGTTAGATGATGATACGAGCGTGGAGTCGGATTGTTCACCAAATAGGATAGGCAATAACGGTGGAAGAGAATCCCCTGTTTCCGACGATTATAGTGATTAA 5253 42.83 MEAAASDGGNHNLNNDNINKISNSSEGLSRPKRQMKTPFQLETLEKAFALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRNVVPAFPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVASGSGGDDMLMTRRYYEPSRSIMELRAIACVESQLGEPLREDGPIIGIEFDSLPPDAFGAPLAVAEQQKRSGHLYGDKYDQRDAKSNKATARAFPEYPFMPDQSRIRADAYGPVAQSHYPDSLVEVSAARNPSFLLGREQLNRSHNYHGQVSRVRLLSQQEQQGIAVPSPADDNTFVPASIRNPIVVQEDSYMLPDGQVFPNDVIIRMERKRKSEEARLNKEAEAHEIRMRKELEKQDNLRKKSEERIRKEMEKQDRERRKEEERLQREKQREVERLKREERRELERREKFLQREYLKAEKRRQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMEIAAANKGLSSILSLDHDTLQNLESFRDYLGAFPPKSVQLKKPFSIQPWINSEENIGNLLMVEPPSLYSSTSILRVMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGLGMNQNGVANTGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLKRSLAWSEMRSNDEAKCGEDVVSTLRNGSAAENAFSIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSRTPEASISVALTRDTKLFERIAPSTYRVRSPYRKDPDDAEDLLSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDVAMTSLVNEDVSKGDANLGVENENSCHDIDGNPQNEIAKNIPSSPLSGSKDTKYLNIPTEQQAAVDGTTVTDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHIVSKVETELNGSAMEDGQSPFPVADSQNNETTLCNAENLGSVPNERATLVPDFFPVPDNFLAQQCGHASKRSRSQLKSYIAQRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWMLIDSEEGFDALSMALDTRGVRESHLRIMLQMIETSFKENVRRNLQCVNVMVQSRITPKNENDESSSSPDCNASFNSPSSTVCGLNLDTTITSSSFRIELGRNENEKKAAFKRYQDLHRWMLRECFSTSTLCAMEFGEKRCMPLLDICDSCLCLFDSQHSHCSSCHQTYGTSENDTNFLEHECHCTRERKSYNWDTHALDASLPLKSRLLKALLAFIEVHVPSEAFQLFWTEHRKDWGVRMKLSSTIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISRNVIHDAADVGSVLTLPWIPRTSAAVALRLCEIDVSIYYIGCEKPEPDQYKEIGEHVNFPSRFVQIKNENELDYDGLMKQENLADPKNLRNSYKRDRRSRDHGRRKRWQKKVNGSKSSRVRPNVKSNEKMNEEQRELGQGMQVLGVRGPRTVRKRRAENSIPDEGLLGLVPSSSTRNIDESPKDYIGKWEDEKMDRFVDMEDDENVMEDEENEEDEENVNNVEPMDSDEDAQEVGYEQGSWEYGIDNGTSNRWNGDLGVASDEEDVELSEDYNGTEEGGNDFGEEELDDDTSVESDCSPNRIGNNGGRESPVSDDYSD 1750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1016570 1028739 + CmaCh07G002190.1 Cma07g00219 297534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00219 1750 MobiDBLite consensus disorder prediction 369 409 - -
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1 38 - -
Cma07g00219 1750 SMART testlast3 551 609 IPR018501 -
Cma07g00219 1750 SMART HOX_1 29 91 IPR001356 GO:0003677
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1529 1546 - -
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1728 1750 - -
Cma07g00219 1750 Coils Coil 341 454 - -
Cma07g00219 1750 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1634 1667 - -
Cma07g00219 1750 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Cma07g00219 1750 Coils Coil 989 1009 - -
Cma07g00219 1750 MobiDBLite consensus disorder prediction 8 31 - -
Cma07g00219 1750 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1110 1180 IPR028941 -
Cma07g00219 1750 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 799 IPR007759 GO:0006355
Cma07g00219 1750 MobiDBLite consensus disorder prediction 113 139 - -
Cma07g00219 1750 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 939 979 IPR028942 -
Cma07g00219 1750 Gene3D - 29 87 - -
Cma07g00219 1750 SUPERFAMILY Homeodomain-like 20 87 IPR009057 -
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1595 1615 - -
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1509 1570 - -
Cma07g00219 1750 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 4 1750 - -
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1634 1750 - -
Cma07g00219 1750 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 1750 IPR044977 GO:0006357
Cma07g00219 1750 Pfam DDT domain 557 606 IPR018501 -
Cma07g00219 1750 CDD homeodomain 30 87 IPR001356 GO:0003677
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1207 1227 - -
Cma07g00219 1750 Coils Coil 1632 1652 - -
Cma07g00219 1750 Pfam Homeodomain 30 86 IPR001356 GO:0003677
Cma07g00219 1750 ProSiteProfiles DDT domain profile. 550 609 IPR018501 -
Cma07g00219 1750 MobiDBLite consensus disorder prediction 1692 1725 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00219 Cma-Chr7:1016570 Cma19g00894 Cma-Chr19:8168618 0 dispersed
Cma07g00219 Cma-Chr7:1016570 Cma03g01289 Cma-Chr3:8369310 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35335 PF15613 WSD 3.00E-13 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00219 - - cmo:103484497 2766.1