Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00235 ATGGACGACGACGACGAAGACCACCGTCTCCGCCTCCGCCGCAACCACCGCCACCGCCACAACCTCAACCTTCCTCCGTTCCCCCCCACCACTGCCCTCTCTCCTCCTCCTCCTCCTCAAAATTCCCCCGTCCCAATTCTTCCCCACCCGCCCTTGGGATTCTCCCTCCGCACTCCACAATCCTATTTCGTCCCACCCTCCTTGGTCTCCTACGGCTTCCCCATTGAAAACGACCCTATTAATCCCCTTTTGCCTAAAGATGATGGCCGAAGGGGTTTGGATGCTTGGAGTACTAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAAGCCTCAGCGTCACTAAACCCCCTTCTTCTTCCTCCTCCTCTTCTGGGTTTGCCGGTAGCAGCGACCACCATTCCAAAGGAATAACAGTAACCCCTTCTCAACCCAACAGAACCCACAATCTCAATCTCTCCACCCTCAGCACTCCAGATAAGGTATTGAGAATATTGCTGAAGAAAGAGCTGAAGAACAGTGATGTCGGGTCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAAGCTGAAGAGAATCTTCCATTTCTGACTGATAAGGAAGGAATGCAGATTGTGATAAGAGATGTGAATTCGAACAAGAAATGGTCCATGAAATACAAGTACTGGGCAAACAACAGGAGTAGAATGTATGTTCTTGAAAGCACAGGGGATTTCGTTAAACAAAATGGGCTAATGATGGGAGATTTAATTACCCTTTATGAGGATGATAGCAAGAACTTCTACGTGACTATTGATAAAGGGGAGAAGCATTTAATCAGGGATGGAAATGAAGAGAAAAAGAAAGAGGCAGCGGCAGCAGCAGCAACAGCTTCTGCTTACCCAAACATGAACATTAAAGACGAAGAAGAGGATGACAATTTAGCTCTGTTGATAGAACAGCTCAAACACAAATCAGAAGACGACGAGCTCCCACAGTCACCCTGCGCCACTAGCCTCCTACTTTCACGTTCATACTTTGAGAGAGGGACCTATACGGGAGCTGAAAAAGGGAATGACAACCATAATAATCATAATGATAATAATGATAATAATGATAATGATAATAATGGGAAGGAAGTGGAAGGCTTTGAAGATTGCTTTGGAGACCTTGAAATTCTGCCGGAAGTTAGTGGGTTCAAGTTCCCTATTCTCGACTATTTGAGAAACGACAGAATATGA 1221 46.68 MDDDDEDHRLRLRRNHRHRHNLNLPPFPPTTALSPPPPPQNSPVPILPHPPLGFSLRTPQSYFVPPSLVSYGFPIENDPINPLLPKDDGRRGLDAWSTKVARSKRRLARQRSLSVTKPPSSSSSSSGFAGSSDHHSKGITVTPSQPNRTHNLNLSTLSTPDKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGMQIVIRDVNSNKKWSMKYKYWANNRSRMYVLESTGDFVKQNGLMMGDLITLYEDDSKNFYVTIDKGEKHLIRDGNEEKKKEAAAAAATASAYPNMNIKDEEEDDNLALLIEQLKHKSEDDELPQSPCATSLLLSRSYFERGTYTGAEKGNDNHNNHNDNNDNNDNDNNGKEVEGFEDCFGDLEILPEVSGFKFPILDYLRNDRI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1082795 1085201 + CmaCh07G002350.1 Cma07g00235 297550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00235 406 Pfam B3 DNA binding domain 170 265 IPR003340 GO:0003677
Cma07g00235 406 Gene3D - 158 276 IPR015300 -
Cma07g00235 406 MobiDBLite consensus disorder prediction 353 374 - -
Cma07g00235 406 ProSiteProfiles B3 DNA-binding domain profile. 168 269 IPR003340 GO:0003677
Cma07g00235 406 MobiDBLite consensus disorder prediction 1 48 - -
Cma07g00235 406 CDD B3_DNA 167 265 IPR003340 GO:0003677
Cma07g00235 406 MobiDBLite consensus disorder prediction 113 155 - -
Cma07g00235 406 SMART B3_2 168 269 IPR003340 GO:0003677
Cma07g00235 406 SUPERFAMILY DNA-binding pseudobarrel domain 168 265 IPR015300 -
Cma07g00235 406 MobiDBLite consensus disorder prediction 99 155 - -
Cma07g00235 406 MobiDBLite consensus disorder prediction 345 374 - -
Cma07g00235 406 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 76 395 - -
Cma07g00235 406 MobiDBLite consensus disorder prediction 28 48 - -
Cma07g00235 406 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 76 395 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00235 Cma-Chr7:1082795 Cma08g00060 Cma-Chr8:349224 3.94E-33 dispersed
Cma03g01273 Cma-Chr3:8317256 Cma07g00235 Cma-Chr7:1082795 1.76E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35341 PF02362 B3 1.80E-16 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00235 - - cpep:111804135 340.887