Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00240 ATGGAGAAGGAGGCTAATTCTTGGCTTAGGAGAACCAAGTTCTCTCACACAGTTTATCATCGATGGGACTCGTTAAGATTGACCCCTGTTCCTTTCACCATCGAACCACCTCGCAATTCTGGCTTGAAATCGAGGCCTCAACCAACTTCATCACCCCAGAAACCAAATCCTGATATTTCGAAGATTCAACCAAGTTTCGTATCCAACAAGACGAGGTATCTGTCTCCTCTTCCCACCAGCAACCTCTCTGGCCTTTTCAGGGAAGCAAAATCCGAGAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACAAACGAAGGAATTCAAGAACATGGATCCTCAAGTTTCTAAATCTGCCAATTTCAAGTCATCTTTGAATACCAGTCCACTGAAACACCTAGCTTCGGCAAAACGAGGTGATAAGTCAAAGCCCCGGAAGGACTCACCCTGGACCAAATATTTCGAGTCCGGTGGTGTAAGAGTCACCGCAGTCGAAACGGTTGATGACTGGAGTGTTGATCTCTCCGAGTTGTTTCTCGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGACTATATCATGGAAAATACAAGGACAAACCTGTTGCTGTTAAAATTATTCGGCAGCCTGAGGACGACGAAAATGGAGTTCTTGCTTCGAGATTGGAGAAGCAATTCACCAGAGAAGTTTCCCTTTTATCTCGTCTCAATCATCCGAACGTTTTAAAGTTTGTAGCTGCCTGTAGGAAGCCACCAGTTCACTGTGTCATTACCGAATATTTGTCTCAAGGATCATTAAGAGCATACTTGCACAAACTTGAGCACCAATCTCTCCCTATGCGAAAACTAATTGCAATGGCTTTAGATGTCGCTCGTGGCATGGAATATATTCACTCACAAGGCGTAATTCATCGGGATCTTAAACCCGAAAATGTTCTTATTGACGAGGACTTCCACCTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGATGCCTTTCTTGACCCATTGGCTGATGATCCTGGTACTTATCGATGGATGGCACCGGAGATGATTAAACATAAACCCTATGGTCGAAAGGTTGATGTGTACAGCTTCGGGCTTATGTTGTGGGAAATGGTGGCTGGTGCAATTCCTTACCAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAACAAGAATCTTAGGCCTGTTGTCTCAAGTGATTGTCCGTTGGCTATGCGAGCACTGATCGAGCAATGTTGGTCTGTAAATCCAGAGAAGAGACCCGATTTCTGGCAGGTAGTGAAGGTATTAGAGAAATTCGAGTATTCGCTTGCCCATGATGGGAAACTCGCTTTAGTAGGAAATCCTCTGTCTAGTTTTCATCAAGACCATAAGAAAGGAGGGCCACTCCATTGGATTCAAAAGCTTGCCCCTCTACATCCTGAACCCTCACCCCGCCCCAAACCCAAATTCTCATAA 1473 44.94 MEKEANSWLRRTKFSHTVYHRWDSLRLTPVPFTIEPPRNSGLKSRPQPTSSPQKPNPDISKIQPSFVSNKTRYLSPLPTSNLSGLFREAKSESKRFSTPTPRLREQTKEFKNMDPQVSKSANFKSSLNTSPLKHLASAKRGDKSKPRKDSPWTKYFESGGVRVTAVETVDDWSVDLSELFLGLRFAHGAHSRLYHGKYKDKPVAVKIIRQPEDDENGVLASRLEKQFTREVSLLSRLNHPNVLKFVAACRKPPVHCVITEYLSQGSLRAYLHKLEHQSLPMRKLIAMALDVARGMEYIHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPDAFLDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGAIPYQDMTPIQAAFAVVNKNLRPVVSSDCPLAMRALIEQCWSVNPEKRPDFWQVVKVLEKFEYSLAHDGKLALVGNPLSSFHQDHKKGGPLHWIQKLAPLHPEPSPRPKPKFS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1094237 1095902 + CmaCh07G002400.1 Cma07g00240 297555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00240 490 MobiDBLite consensus disorder prediction 88 151 - -
Cma07g00240 490 CDD STKc_MAP3K-like 186 435 - -
Cma07g00240 490 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 463 - -
Cma07g00240 490 Pfam Protein tyrosine and serine/threonine kinase 185 435 IPR001245 GO:0004672|GO:0006468
Cma07g00240 490 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 463 - -
Cma07g00240 490 Gene3D Phosphorylase Kinase; domain 1 167 263 - -
Cma07g00240 490 MobiDBLite consensus disorder prediction 40 63 - -
Cma07g00240 490 ProSiteProfiles Protein kinase domain profile. 179 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00240 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Cma07g00240 490 SUPERFAMILY Protein kinase-like (PK-like) 157 435 IPR011009 -
Cma07g00240 490 PRINTS Tyrosine kinase catalytic domain signature 259 272 IPR001245 GO:0004672|GO:0006468
Cma07g00240 490 PRINTS Tyrosine kinase catalytic domain signature 297 315 IPR001245 GO:0004672|GO:0006468
Cma07g00240 490 PRINTS Tyrosine kinase catalytic domain signature 343 353 IPR001245 GO:0004672|GO:0006468
Cma07g00240 490 PRINTS Tyrosine kinase catalytic domain signature 362 384 IPR001245 GO:0004672|GO:0006468
Cma07g00240 490 PRINTS Tyrosine kinase catalytic domain signature 406 428 IPR001245 GO:0004672|GO:0006468
Cma07g00240 490 Gene3D Transferase(Phosphotransferase) domain 1 264 451 - -
Cma07g00240 490 MobiDBLite consensus disorder prediction 88 112 - -
Cma07g00240 490 MobiDBLite consensus disorder prediction 113 133 - -
Cma07g00240 490 SMART serkin_6 179 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00240 490 MobiDBLite consensus disorder prediction 136 151 - -
Cma07g00240 490 MobiDBLite consensus disorder prediction 30 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00240 Cma-Chr7:1094237 Cma07g00340 Cma-Chr7:1466430 1.78E-113 dispersed
Cma13g00640 Cma-Chr13:6076993 Cma07g00240 Cma-Chr7:1094237 0 wgd
Cma18g00374 Cma-Chr18:2041128 Cma07g00240 Cma-Chr7:1094237 0 wgd
Cma03g01267 Cma-Chr3:8307182 Cma07g00240 Cma-Chr7:1094237 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68674 PF07714 PK_Tyr_Ser-Thr 6.60E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00240 - - csv:101204268 823.157