Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00288 ATGGTTTGTACTGTTCTTGCTGGATTCAGAGTGATAGAATATCTGCACTACGTCGCCGTTGAAATTTCTTCTTTGAATTTGGGTATTCTTCTTCATCAGCTTTTCAGGTCAGGCTGTATTTCTGTTCAGAGAGATCTTGATATGGGTGGAAATTGCAGGACGTTTGTTGGGTTTCTTCTGTTCTTCGTCATTTCATTCTTCCTCTGTTCTTCTCCTTTGTTTTGTGACGCTGCGAGTTCAATCACAAGGGGCACAGGTTTAAGAGACAGTAATAACGAGACCCTCATATCCGAAAATGAGTCCTACGAGCTGGGTTTCTTCAGCCCCATAAATTCTTCATCACGATACGTTGGTATATGGTATCACAAGATCCCGGAACAGTCTGTTATTTGGGTTGCAAATAGGGACCAGCCACTTCTGAATAGAGATGGGGTTTTGAAGATCGGAGACGATGGGAACTTGGTCATTCTGGACGGCAACAACGTCTCTGTTTGGACAAGCAATATCACAGCGAATGCGTCTGATCTGAGGAACTTAACTCTGGGTAAAAATGGAGAATTGATTCTCTCGACCCACGACGAGCCGTCGAAAGTCCATTGGAGCAGCTTCGGACACCCTACAGATACATTTCTTCCGAACATGGTGGTGAAAGTGAACTCTGATTTGGGTGAGAAACGGATTTTTAGGTCGTGGAAATCAGAGACAAATCCGGCCGTCGGAAATTACAGTTTGGGTGTGGATCCTCTTGGAGCCGTACAGATTGTCATTTGGAATGGGGAAGATCGATGGTGGAGAAGCGGGCACTGGGATAAGCAGATTTTTTCAGGGGTTCCGACCATGCGCTCAACGTCGTTGTATGGCTTCAAGGTTAACGCTGAGCGTCGAGACGAAATAACCTTGACTTTTCATCCATTGAATAACTCCGATGAGATGAAATTTCAAATACAGTGGGATGGTAAAGAAGCAGAGCAACGATGGAATGAAGCGAATCGCGTATGGGACACCATTCGTTTACTGCCTTCCAACGACTGCGATTTGTATAATTTTTGCGGGGATTTTGGGATTTGTTCTGAAACAAGTAGACCCAAGTGTAGTTGCCCTCATGGGTTTATACCCAAAAACAACGAGCAATGGAAGAGTGGGATTTGGTCAGATGGGTGTCAGAGGAAGACCCCATTGCTACAGCAGAGGATGAATAGTAGTTCGAATGGCACTGTTGAAGATGGTAAAGAAGATGGGTTTGTGGCTGTACAGTTCGTGAAATTGCCTGATTTCATAACTGCAGTGTTTGTGGACTCTTGTAGAGATGATTGTGCGAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCATGGAATTGGGTGTCTTACTTGGGATGGTCCCTTAATTGATATTCAGAAATTCGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGAATAGCGAGAGCAAATTGTCGACCGCTGCGATAGTATTGATATGTTTAGGAGGAGCAGTTGTTATAGCCATGTTAGCATTGCTGATATGGAAATTCAGAGACAAAATGAAAGGTTCGGCAGCTGCTGCTTTGAGTAAAACACAGAACAACAATGAAATGTTTGACCTGAGCAAGAGCAAAGAATTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCAGAGAAGGCGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGCAACGGCTACTGGTAACTTCTCTGAGGAAAACAAGCTTGGCCAGGGAGGTTTCGGCCCAGTCTACAAGGGAAAGCTTCCATGTGGCCTAGAAGTTGCTGTGAAGAGGCTCTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTGATAGGAAAGTTGCAGCACCGCAACCTGGTCAGGCTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAGTTAAGCAGGTACTACTGGATTGGGAAAAACGGTTGTCAATCATGGAGGGAATTGCACGAGGACTGCTATATCTTCATCGAGACTCGAGACTCTTAATCATTCATAGAGATTTGAAAGCCAGCAACATTTTGCTAGACGAAGACATGAATCCAAAGATATCGGACTTTGGTATGGCTAGAATATTTGGCGGAAATCAAAACGAGGCAACAAATACAATTCGAGTTGTTGGCACATACGGTTACATGGCTCCTGAGTATGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTGTATTATTATTAGAGTTAATATGCGGTCGGAGGAACACTAGCTTTCGGTCAACTGAGTACTTAACCCTTATCAGCTATGCATGGAATCTTTGGAATGGAGGAAGAGCGATCGAACTTCTCGATCCGTCCATTCGGGATTCGTCCCGAGAGGAGGAAGTATTGAAATGCATACATGTAGCAATGTTGTGTGTACAAGACTCCCCAGCATATAGACCAACAATGCAGTCCTTGGTGCTAATGCTGGAGAGTGAGTCTGCATCTCTTCCACAACCAAGACAACCTACCTATACTTCCACAAGAGCCTCAATCGACATCGACTTATTTACCGATGGCCATGACGTTGTATCATCGAACAACGTAACAGTGACAATGGTGGAGGGTAGATAG 2706 44.12 MVCTVLAGFRVIEYLHYVAVEISSLNLGILLHQLFRSGCISVQRDLDMGGNCRTFVGFLLFFVISFFLCSSPLFCDAASSITRGTGLRDSNNETLISENESYELGFFSPINSSSRYVGIWYHKIPEQSVIWVANRDQPLLNRDGVLKIGDDGNLVILDGNNVSVWTSNITANASDLRNLTLGKNGELILSTHDEPSKVHWSSFGHPTDTFLPNMVVKVNSDLGEKRIFRSWKSETNPAVGNYSLGVDPLGAVQIVIWNGEDRWWRSGHWDKQIFSGVPTMRSTSLYGFKVNAERRDEITLTFHPLNNSDEMKFQIQWDGKEAEQRWNEANRVWDTIRLLPSNDCDLYNFCGDFGICSETSRPKCSCPHGFIPKNNEQWKSGIWSDGCQRKTPLLQQRMNSSSNGTVEDGKEDGFVAVQFVKLPDFITAVFVDSCRDDCANSSSCVAYSDAHGIGCLTWDGPLIDIQKFDGVGNTLNIRLAHSDLNSESKLSTAAIVLICLGGAVVIAMLALLIWKFRDKMKGSAAAALSKTQNNNEMFDLSKSKEFSAELSGPYELGREGEQLSGPDLPMFNFNCIATATGNFSEENKLGQGGFGPVYKGKLPCGLEVAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPVKQVLLDWEKRLSIMEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWNLWNGGRAIELLDPSIRDSSREEEVLKCIHVAMLCVQDSPAYRPTMQSLVLMLESESASLPQPRQPTYTSTRASIDIDLFTDGHDVVSSNNVTVTMVEGR 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1281330 1284978 + CmaCh07G002880.1 Cma07g00288 297603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00288 901 Pfam PAN-like domain 410 465 IPR003609 -
Cma07g00288 901 SUPERFAMILY Protein kinase-like (PK-like) 568 879 IPR011009 -
Cma07g00288 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Cma07g00288 901 Gene3D - 75 204 IPR036426 -
Cma07g00288 901 Gene3D Phosphorylase Kinase; domain 1 558 658 - -
Cma07g00288 901 Pfam Protein tyrosine and serine/threonine kinase 586 852 IPR001245 GO:0004672|GO:0006468
Cma07g00288 901 SMART blect_4 86 206 IPR001480 -
Cma07g00288 901 SMART serkin_6 583 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00288 901 CDD B_lectin 90 206 IPR001480 -
Cma07g00288 901 CDD STKc_IRAK 589 855 - -
Cma07g00288 901 CDD PAN_AP_plant 407 480 - -
Cma07g00288 901 SUPERFAMILY alpha-D-mannose-specific plant lectins 129 237 IPR036426 -
Cma07g00288 901 ProSiteProfiles Bulb-type lectin domain profile. 80 202 IPR001480 -
Cma07g00288 901 Pfam Domain of unknown function (DUF3403) 856 901 IPR021820 GO:0004674
Cma07g00288 901 PIRSF SRK 52 901 IPR024171 GO:0004674
Cma07g00288 901 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 59 901 - -
Cma07g00288 901 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 59 901 - -
Cma07g00288 901 ProSiteProfiles EGF-like domain profile. 340 376 IPR000742 -
Cma07g00288 901 Gene3D Transferase(Phosphotransferase) domain 1 659 871 - -
Cma07g00288 901 Pfam S-locus glycoprotein domain 264 374 IPR000858 GO:0048544
Cma07g00288 901 Pfam D-mannose binding lectin 129 232 IPR001480 -
Cma07g00288 901 ProSiteProfiles Protein kinase domain profile. 583 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00288 Cma-Chr7:1281330 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma13g00690 Cma-Chr13:6301274 Cma07g00288 Cma-Chr7:1281330 1.99E-89 dispersed
Cma01g01169 Cma-Chr1:8503318 Cma07g00288 Cma-Chr7:1281330 1.80E-133 wgd
Cma13g00687 Cma-Chr13:6295714 Cma07g00288 Cma-Chr7:1281330 6.38E-103 wgd
Cma18g00332 Cma-Chr18:1779036 Cma07g00288 Cma-Chr7:1281330 0 wgd
Cma19g00948 Cma-Chr19:8421147 Cma07g00288 Cma-Chr7:1281330 1.84E-62 wgd
Cma20g00649 Cma-Chr20:3000088 Cma07g00288 Cma-Chr7:1281330 1.63E-45 wgd
Cma03g00504 Cma-Chr3:4936160 Cma07g00288 Cma-Chr7:1281330 0 wgd
Cma07g00288 Cma-Chr7:1281330 Cma09g00906 Cma-Chr9:4507821 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68675 PF07714 PK_Tyr_Ser-Thr 7.00E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00288 - - csv:101207147 1441.02