Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00289 ATGGCGGCTTCATATCCCGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTATCCTCCGGCCACACCTTTGATCGCTCTTCAATCCAACGCTGGCTCGACGCCGGTCATCGGACTTGTCCAATCACCCAATTGCCCCTTCCTGAAAACCCTTCTCTAATCCCTAACCATGCCCTCAGGAGCTTAATTTCAAATTTTAACCCTGTTTCCCTTTTCAAGCCATTTCTTCCTCATCCACCGCCCCAAACCCTAATCTCGATTCTCATCTCTCCTTCTGCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTGTCAAAGCGCGATTCCGTTATGCGAAGAAAATTGACCGAGTCTGGTGCCGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCGACCCTCCAAGAGAAGGCCCTGTCGCTGTTACTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGTCTCACCGTCGCAGCTCTTCAAGCCAGGTCCCCTGATTGCAGAGCCGTAGCCGCCACGATGCTGACGAGCTTAGCCGTTGTGGAGGTCAACAAGGCTACAATTGGGGCATATCCCTACGCGATTCGCTCTCTTGTTGGTCTCTTACGATACGGCAACAACAGAGAGCAGAAGGAAGCAGCAACAGCACTTTACGCCATCTGTTCGTACCCTGGGAACCGTGTACGGACTGTGGAATGTGGGGCTGTTCCCGTTCTGCTTGAAATTGCCAATTCGGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTGCAGAGAAGGTCGAGAAGAGATGCAACGGTTCCACGGAAGTATGGAGATTTTGGGACGTGTGTTGAGAAATGGAGCCCCAAGAGGAGTTCAATACGCTCTTCTAACGCTGAGTTCGCTCTGCTGCCATAGCGAGCGAGCGTGCGTGGAAGCTAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAACGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGAGGAAACAACGCATGA 1098 50.55 MAASYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPENPSLIPNHALRSLISNFNPVSLFKPFLPHPPPQTLISILISPSASLDSKLDCLNQLARVSKRDSVMRRKLTESGAVSAVLKCVGSDDPTLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVGLLRYGNNREQKEAATALYAICSYPGNRVRTVECGAVPVLLEIANSGLDRAVEVLGLLAKCREGREEMQRFHGSMEILGRVLRNGAPRGVQYALLTLSSLCCHSERACVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1286470 1287567 + CmaCh07G002890.1 Cma07g00289 297604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00289 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Cma07g00289 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cma07g00289 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Cma07g00289 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Cma07g00289 365 Gene3D - 87 207 IPR011989 -
Cma07g00289 365 Gene3D - 270 365 IPR011989 -
Cma07g00289 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Cma07g00289 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Cma07g00289 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Cma07g00289 365 Gene3D - 208 269 IPR011989 -
Cma07g00289 365 SMART arm_5 159 199 IPR000225 GO:0005515
Cma07g00289 365 SMART arm_5 118 158 IPR000225 GO:0005515
Cma07g00289 365 SMART arm_5 200 241 IPR000225 GO:0005515
Cma07g00289 365 SMART arm_5 279 320 IPR000225 GO:0005515
Cma07g00289 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Cma07g00289 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Cma07g00289 365 SUPERFAMILY RING/U-box 4 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00289 Cma-Chr7:1286470 Cma13g00132 Cma-Chr13:899216 2.14E-59 dispersed
Cma03g00505 Cma-Chr3:4940307 Cma07g00289 Cma-Chr7:1286470 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00289 - - csv:101213883 635.95