Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00291 ATGGCGGAGGATTTTCAGGCTGCTATTTGCGGCGATAATTGGTGGAGCTTTTCACGAAACATGATGGTCACCGTCGGTGGCTTATCGCCCTGTTCCGTCGGGATTGGCGACCTAGGTTGGCCGCCGGCTGATGATTTCCTCGACATCAAGCCCAAGTCCGCAACTGATTCCGACCACAACAACAACTCCATGCTTTTTCAAGATTATTCCACCTTCCAAATGATGGGTTTTGCTCTTTCTTCTTCCACCACCTCCGATCATTGGAACCAACCTGATGGTTTACTTTGCGGCGGTGGGCGAGGTGAGAGCAACTTCAATTCGAATGGAATTGAGAGGTACAAAGATGAGGAAATTACAAGGAGTTTCACGTCTGATTCGAGCTTCATAAACGGATTGAAGCAAGGAGATGATGAAGATTACAACATGTTGGAGCAAAATGGTTTGATGTCTACAACTAACACACCCACTTGCCAGGGTTTGTTTCCTCTTGACTCAACTTTATATGGATACCCTCATCAACAACAACAACAACAACAACCACCACCACCACATGCCCATTCCCTTTTCAACTCAACCCACCCTCAGCCTCAGCCTGTTTCTGCCGCCTTGCACTTCGCCAATAACACTCCCTTTTGGAACGCCCCAACCGCAGCTTCTTCTACTCACATTCCACAGGGCATTGCTTCCTTACTTGAACAAAAGAGCGCCAAATCCCAAAATAGTTTGAAGCCTATCAATAATGGTAATTGTGAAAATGGTCAAGAACCCAAGAAAGGTGACAAAAACAGCGCAAATGAATCAGTGCCAGTGTTCAAAAGGCCTCGAATTGAAACTCCATCACCATTGCCGACATTTAAGGTGCGGAAAGAGAAGCTAGGGGACCGTGTCACTGCGCTTCAACAACTGGTTTCACCGTTTGGAAAGACCGATACTGCCTCAGTTCTTCACGAAGCCATTGAGTACATCAAGTTCCTCCACGATCAAGTCTTAAGCACTCCATATATGAAGAGCAACAATGGAATAACACCCACCCAACAACACCAACAGGTATGTGAAAAGGAAGACCCAGATTGCCCAAAACAAGATCTGAGAAGCCGAGGGCTTTGCTTGGTGCCGGTTTCAAGCACATTTCCAGTGTCCAATGTAGGCACGGCGGATTTCTGGACTCCGACGTTCGGCGGAACATTCCGAGTAGTGGTAGAGTATTGGGAAGAACAGGAACAAGTGCTAAATTCAGGTAAAGTACTCAACGACACAGACAGGGCAGCGTAA 1272 47.09 MAEDFQAAICGDNWWSFSRNMMVTVGGLSPCSVGIGDLGWPPADDFLDIKPKSATDSDHNNNSMLFQDYSTFQMMGFALSSSTTSDHWNQPDGLLCGGGRGESNFNSNGIERYKDEEITRSFTSDSSFINGLKQGDDEDYNMLEQNGLMSTTNTPTCQGLFPLDSTLYGYPHQQQQQQQPPPPHAHSLFNSTHPQPQPVSAALHFANNTPFWNAPTAASSTHIPQGIASLLEQKSAKSQNSLKPINNGNCENGQEPKKGDKNSANESVPVFKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLSTPYMKSNNGITPTQQHQQVCEKEDPDCPKQDLRSRGLCLVPVSSTFPVSNVGTADFWTPTFGGTFRVVVEYWEEQEQVLNSGKVLNDTDRAA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1294348 1296360 - CmaCh07G002910.1 Cma07g00291 297606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00291 423 Gene3D - 286 350 IPR036638 GO:0046983
Cma07g00291 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983
Cma07g00291 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 330 IPR036638 GO:0046983
Cma07g00291 423 MobiDBLite consensus disorder prediction 235 282 - -
Cma07g00291 423 MobiDBLite consensus disorder prediction 168 199 - -
Cma07g00291 423 CDD bHLH_AtbHLH_like 282 329 IPR045239 -
Cma07g00291 423 MobiDBLite consensus disorder prediction 164 199 - -
Cma07g00291 423 MobiDBLite consensus disorder prediction 235 253 - -
Cma07g00291 423 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 53 382 - -
Cma07g00291 423 PANTHER TRANSCRIPTION FACTOR BHLH103 53 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00929 Cma-Chr4:4795265 Cma07g00291 Cma-Chr7:1294348 3.15E-60 dispersed
Cma07g00291 Cma-Chr7:1294348 Cma16g00839 Cma-Chr16:4812754 1.59E-52 dispersed
Cma13g00697 Cma-Chr13:6338777 Cma07g00291 Cma-Chr7:1294348 5.21E-48 wgd
Cma03g00508 Cma-Chr3:4950547 Cma07g00291 Cma-Chr7:1294348 6.21E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00291 - - bhj:120072732 482.256