Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00296 ATGATGGAGATGGGCAGTTTCAGTTTAGGAAGGATTTTCTACCTCGCCTTCGTTATTGCACAATTGATGTCTACCACAATTTCTCAGCAGGAATTTTTATCATACAAATGTTCAGAGAACGCCAACTACACCAACAACAGCCCTTTCAAGAAAAATCTCGACAACGTACTCGCCTTAATCACCTCCAACTCTAACACCGACACCCGGGTCGACTACGGTTTCTATAATGCCACCTCCGGTGAAGATCCCGACACAGCCAACGCTAAGGTTCTTTGTCGTAAAGGCGTTCCCTTGGAGGACTGCAGATCATGCGTGAATGAATCAGCCATCAGGATTGTACAAGACTGTCCAAACCAGAAGGAAGGTGTGGGATGGTACAGTAATTGCCAAATACTTTACTCAAACAACTCTGTTCACGGTGAGATAAGCATCAATTCCGCGTCGCGAATTGCTTACAACACCGCTCAGGCCCCGGATGCTATCAGTTTCAATGAGAAACGGAGAGAGTTGTTAGATCGACTCCGAGAGGAGGCTGCGTCAGGGACTTCAATTCGCAAGTCTGCAGGCGGAGATGTCAAACTTGGAAGTCCGAATACGTATACCATATATGGCCTTGTCGATTGTTTCCCCGACATGTCGTACTTCAATTGTGATGTCTGTCTCAGTCGTCTTCAAAGTAATCTTCCTAGTTGTTGTAACGGCAGCATAGGAGCGAGATTAACTGTGACAAGTTGTCAAATAAACTACGAAATCCACCCTCTCTATGCGGCACTTCTCTCTCCTCCTCCTCCTCTGCCGCCGCCCTCAGCTCCTAATCTCTTCCCTCCATCTTCGCCTTCGACACTAGAAAATAATGGCAATACTACTAGAACTGTTATAATTGTTGTGGTGTCCATCGTTTCAGCCCTCATTATCATTGTTGGCATTTGCATCGTTGCGAGATTGAGGAAGCGAAAGCACAGAAGACCATTACAAAATCTTGAAACTGTTGCTCATGGAGACGCCACTGATGAAATTAGCAGCGTGGAGACGATTCAGTTTAATTTTGACACAATTAAAGAGGCAACTGATGACTTCTCAGACGAAAACAAGCTGGGACAGGGTGGATTCGGAGCTGTTTACAGGGGTAAGCTTCCTAATGGACAGCATATTGCAGTGAAGAGGCTTGCGAACAATTCACAACAAGGCGACGTTGAATTCAAAAACGAAGTCCTTTTGGTGGTCAAGCTTCAGCACCGGAACTTGGTTAGGCTGCTGGGTTTCTGCTTGCAAGGAATTGAAAGACTTCTCATATATGAGTTTGTACCAAATGGCAGCCTTGACCACTTCATATTTGATTTTGGAAAGCGGACCCAGTTAAGTTGGGAAAGACGGTACAAAATCATAAACGGCATTGCACGAGGACTTATTTATCTTCACGAAGACTCTCGTCTTCGAATCGTACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATATAGAAATGAATCCAAAAATTGCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATGAGACTCAAGGCAATACAAGTAGAGTCGTGGGAACTTACGGTTATATGGCTCCAGAGTATGTAGTCTACGGACAATTTTCAGTAAAATCAGATGTCTTTAGTTTTGGTATTTTGGTTCTTGAAATTTTGAGTGGTAAAAATGGTACTTGTTTTCGCACCGGAGAAAACGTCGAAGACCTCTCCACCTTTGCATGGAATAATTGGAGGGCAGGAACAACAACAAATATCATAGATTCAACATTTGATGTTGGTTCAAGGATCGAAATGATAAGATGCATTCACATTGGATTATTGTGTGTTCAAGAAAACGTAGCAGATCGACCAACAATGGCTACAGTGCTCATGATGCTAAGTAGTTCTTCTCTCACTCTTCCTATACCCTCTAGACCTGCATTCTTCATGCATAGTATCACCCATGAATCCAACACAATCTTAAAGCCACATAGGGGTACTCATTCGGAAGCCAAGTCTCTTCAAACTTCAGATAATGACATTTCAATTTCGGAGTTTCATCCTCGTTAG 2058 43.29 MMEMGSFSLGRIFYLAFVIAQLMSTTISQQEFLSYKCSENANYTNNSPFKKNLDNVLALITSNSNTDTRVDYGFYNATSGEDPDTANAKVLCRKGVPLEDCRSCVNESAIRIVQDCPNQKEGVGWYSNCQILYSNNSVHGEISINSASRIAYNTAQAPDAISFNEKRRELLDRLREEAASGTSIRKSAGGDVKLGSPNTYTIYGLVDCFPDMSYFNCDVCLSRLQSNLPSCCNGSIGARLTVTSCQINYEIHPLYAALLSPPPPLPPPSAPNLFPPSSPSTLENNGNTTRTVIIVVVSIVSALIIIVGICIVARLRKRKHRRPLQNLETVAHGDATDEISSVETIQFNFDTIKEATDDFSDENKLGQGGFGAVYRGKLPNGQHIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQGIERLLIYEFVPNGSLDHFIFDFGKRTQLSWERRYKIINGIARGLIYLHEDSRLRIVHRDLKASNILLDIEMNPKIADFGMARLFEVDETQGNTSRVVGTYGYMAPEYVVYGQFSVKSDVFSFGILVLEILSGKNGTCFRTGENVEDLSTFAWNNWRAGTTTNIIDSTFDVGSRIEMIRCIHIGLLCVQENVADRPTMATVLMMLSSSSLTLPIPSRPAFFMHSITHESNTILKPHRGTHSEAKSLQTSDNDISISEFHPR 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1312757 1315888 - CmaCh07G002960.1 Cma07g00296 297611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00296 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Cma07g00296 685 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 664 - -
Cma07g00296 685 ProSiteProfiles Protein kinase domain profile. 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00296 685 ProSiteProfiles Gnk2-homologous domain profile. 145 254 IPR002902 -
Cma07g00296 685 SMART serkin_6 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00296 685 CDD STKc_IRAK 365 629 - -
Cma07g00296 685 Pfam Salt stress response/antifungal 158 250 IPR002902 -
Cma07g00296 685 Pfam Salt stress response/antifungal 37 135 IPR002902 -
Cma07g00296 685 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Cma07g00296 685 SUPERFAMILY Protein kinase-like (PK-like) 347 658 IPR011009 -
Cma07g00296 685 MobiDBLite consensus disorder prediction 659 685 - -
Cma07g00296 685 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Cma07g00296 685 Gene3D Transferase(Phosphotransferase) domain 1 435 635 - -
Cma07g00296 685 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 13 664 - -
Cma07g00296 685 Gene3D - 145 253 IPR038408 -
Cma07g00296 685 Gene3D - 29 137 IPR038408 -
Cma07g00296 685 Gene3D Phosphorylase Kinase; domain 1 324 434 - -
Cma07g00296 685 Pfam Protein tyrosine and serine/threonine kinase 362 625 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00296 Cma13g00708 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00515 Cma-Chr3:4974668 Cma07g00296 Cma-Chr7:1312757 1.08E-50 dispersed
Cma07g00296 Cma-Chr7:1312757 Cma13g00707 Cma-Chr13:6389767 0 dispersed
Cma13g00710 Cma-Chr13:6401745 Cma07g00296 Cma-Chr7:1312757 3.11E-18 dispersed
Cma07g00295 Cma-Chr7:1309722 Cma07g00296 Cma-Chr7:1312757 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68677 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00296 - - cmo:103484586 952.97