Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00299 ATGCGTTCGAGATTCGGTCCCGAACATATTCCGCTTTCGTCTCCCCTGCAGCCTGCAACAAGCCCCATCTCTTCGCTTATAATTCCCTGTCCTCCTCGGTCTCCGATAGAGTTTCAGATCTTCTCGCCCTCCAATCCCGATCGCCATCTGCTTCACGACAAGTCGGAGCTCCACCTCAAAGAACTCGGCCTTGTTTCATCATCTTTCATCACCAACAACCCCGATCCCTCGAAGCTGATATTCTTCAATCAGGGCTCCGGAATGCAGCTTGGTGCGGAGGGGAATGTGAATACGCAACGGGTCGTTCTCATGGTTTGGGATCACTTGAGGGTTCTTTGTGGAGGGAAATTTTATGTTTCTGATGTGGTATTCATGATTCTCACTGCTATCATAGTGTCTGTACCGATTGAAGACACTGGAGATTTGTTCATGGCGACCCATGAGCCACTTCTTCCTCAACCCCCCGAAACTACCCGTCCTAAAACCTTCTTCACAATCCTCTTTTTTTCTCTACTTTTGGGCTCTGCCATTTTCATCACCAACAAACTCATCAATTCAAACCCATCTGAAAATGATCATCACCCCTTCCTTCATAACATCTGCTACAAGGCTTACAACCAATCGTCCTGCATTCAAATGCTCGCCTCTGAATTCCCCCTTCTTCAAGAAACCAAAACCACCAACGCGGCGAACTTCTTACAATCCTTCCTGCGGAAATCCACAAGCAAAATAGTCAACACCATCGAGAGCGCCAAAGATCTCCGCCGTCGAATCAACAACCCACGCGGTGAAGCAGCTTTGGCCGACTGCGTTGAGCTCATGGAGATCTCAATGGATCGAATAACCGACTCGATTTTGGCTCTCGAGAGAAGAAGGTGCGGCACAATCGAAAATGCACACACATGGCTGAGTAGCGTGCTGACGAACCACGTGGCGTGCTCGGACGAGATCGAGAATTCAATTTCGAAAGCGGCGGCCATGGATTTAGGGGTTGAAGAGCTGATTGTGATAGGGAGAAATTCATTGGGGATGTTGGTCTCGATTTGGGGATCGGGCAAAAAAGAAGGGATGGGGTATCCGAGTTGGTTGAAGAAGGGAGATAGGAGGCTGTTGGAGGTTGTGGGGAGAGGAATGAAAGCGGATATAGTGGTGGCAAAGGACGGGAGCGGGAACTTCAAGACGGTGAAGGAGGCGGTTGAGGCGGTGCCGGACAAGAGCAAGAGCAGAATTGTGATATATGTGAAGAAGGGGATTTATAAGGAGAATGTGGAAGTGGGGAAGAATAAGAAGAATGTTATGTTGGTCGGAGATGGAATGGATTCCACTATCATCACTGCTAGCCTCAACGTCGTTGATGGATCGACTACATTTAAGTCTGCAACTGTGGCGGCCGTGGGAGATGGATTTATAGCCCAAGACATCTGGTTCAGAAACACCGCCGAGCCGGAAAAGCACCAAGCGGTGGCACTTCGGGTTGGAGCCGACCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCCCATACCAACCGCCAATTCTACCGCGATTCCACCATCACTGGCACCGTGGACTTCATTTTCGGCAACGCCGCCGTGGTATTACAGAACTGCAAAATCGAACCCCGACGTCCGATGAGCAACCAGGCCAACATGGTGACAGCGCAAGGCCGAACAGACCCAAATCAGAACACTGGAACTTCCATCCAAAGATGCGAAATCGTGGCAAGCCCCGACCTGGAGCCGGTTAAGAAGTCCATTAAGACGTATTTAGGGCGGCCATGGAAGGAGTATTCGAGGACCGTGGTTATGCAGTCCACACTAGGCGATCTCATAGATCCAGCGGGCTGGGCGGAGTGGAATGGGGAGTTTGCATTGAAGACGCTGTACTATGGCGAGTATTCTAATAATGGGCCAGGCTCTAATGTTAGCAAACGAGTGAAATGGCCCGGTTACCATGTCATTACGAGCCCAGCAGTGGCCCAAAAGTTCACGGTGGACTCACTTATACAAGGAGCTGAATGGCTGGGCTCCTCAGGTGTGACTTTTATCCCAGGGCTGTGA 2079 50.41 MRSRFGPEHIPLSSPLQPATSPISSLIIPCPPRSPIEFQIFSPSNPDRHLLHDKSELHLKELGLVSSSFITNNPDPSKLIFFNQGSGMQLGAEGNVNTQRVVLMVWDHLRVLCGGKFYVSDVVFMILTAIIVSVPIEDTGDLFMATHEPLLPQPPETTRPKTFFTILFFSLLLGSAIFITNKLINSNPSENDHHPFLHNICYKAYNQSSCIQMLASEFPLLQETKTTNAANFLQSFLRKSTSKIVNTIESAKDLRRRINNPRGEAALADCVELMEISMDRITDSILALERRRCGTIENAHTWLSSVLTNHVACSDEIENSISKAAAMDLGVEELIVIGRNSLGMLVSIWGSGKKEGMGYPSWLKKGDRRLLEVVGRGMKADIVVAKDGSGNFKTVKEAVEAVPDKSKSRIVIYVKKGIYKENVEVGKNKKNVMLVGDGMDSTIITASLNVVDGSTTFKSATVAAVGDGFIAQDIWFRNTAEPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHTNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRTDPNQNTGTSIQRCEIVASPDLEPVKKSIKTYLGRPWKEYSRTVVMQSTLGDLIDPAGWAEWNGEFALKTLYYGEYSNNGPGSNVSKRVKWPGYHVITSPAVAQKFTVDSLIQGAEWLGSSGVTFIPGL 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1326603 1330108 + CmaCh07G002990.1 Cma07g00299 297614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00299 692 MobiDBLite consensus disorder prediction 1 20 - -
Cma07g00299 692 Gene3D Invertase/pectin methylesterase inhibitor family protein 194 347 IPR035513 -
Cma07g00299 692 Gene3D - 375 692 IPR012334 -
Cma07g00299 692 SUPERFAMILY Pectin lyase-like 377 691 IPR011050 -
Cma07g00299 692 ProSitePatterns Pectinesterase signature 2. 525 534 IPR033131 -
Cma07g00299 692 PANTHER PECTINESTERASE 161 691 - -
Cma07g00299 692 ProSitePatterns Pectinesterase signature 1. 406 425 IPR018040 -
Cma07g00299 692 Pfam Plant invertase/pectin methylesterase inhibitor 196 323 IPR006501 GO:0004857
Cma07g00299 692 CDD PMEI-like_4 207 348 - -
Cma07g00299 692 SMART PMEI_2 192 344 IPR006501 GO:0004857
Cma07g00299 692 Pfam Pectinesterase 381 677 IPR000070 GO:0030599|GO:0042545
Cma07g00299 692 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 195 320 IPR035513 -
Cma07g00299 692 TIGRFAM PME_inhib: pectinesterase inhibitor domain 169 319 IPR006501 GO:0004857
Cma07g00299 692 PANTHER PECTINESTERASE 161 691 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00299 Cma-Chr7:1326603 Cma17g01067 Cma-Chr17:7630092 1.05E-152 dispersed
Cma13g00952 Cma-Chr13:7471802 Cma07g00299 Cma-Chr7:1326603 3.63E-14 transposed
Cma20g01066 Cma-Chr20:8035512 Cma07g00299 Cma-Chr7:1326603 2.11E-100 transposed
Cma03g00525 Cma-Chr3:5018509 Cma07g00299 Cma-Chr7:1326603 2.98E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00299 K01051 - csv:101216377 878.241