Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00302 ATGTTCGATCCGGATATGTTCGATACGCATCATCATATGCTCGATATGGCCTTTAACACCTCAGAAAACGAGTTGGAGAATGTTAGAGACGATGATTTTGAGGCCAAATCGGGAGCAGAAATCTTAGAGGAAGGTTGTGGGAGTGACCAACAACGCTCCAAGAAGAAGCGCTACAATCGCCATACGCAGCACCAAATCCAAGAAATGGAAGTATTCTTTAAGGAATGTCCTCACCCAGATGACAAGCAGAGAATGGAGCTGAGCCGCGAGCTGGGTTTGGAGCCTTTACAGGTCAAGTTTTGGTTCCAGAACAAGCGCACCCAAATGAAGGCCCAACACGAAAGACATGAAAATGCAATGTTAAAAGCCGACAATGAAAAGCTTCGCGCGGAGAATATTCGGTACAGAGAAGCGTTCGCCCATTCAACATGCCCCAACTGCGGATCCTCCACAGCCCTCGGCGAAATGTCCTTCGAAGATCAACATTTGCGTATCGAGAATTCCCGTCTGCGAGATGAGATCGACCGAATGAACGGATATGCCCCAAAATGTGCAAAGCCACTGCCTTCTTCCTACTACCACCTCCCCTCCAACGCCCCCACGCGATCTCTCGACTTGGGCATCACAAATTTCGGTCAACAGTCGTGTTTCGTCGGAGAAATGTATGGAACCGCCGACTTTCTCCGCTCCATTTCCAGACCTTCTGAAGCCGACAAGCCGGTCATCGTGGAGTTGGCCGTTTCCGCTATGGATGAACTGACCCGGATGGCTCAGGCTGGGGAACCCTTGTGGGTTCCGGCTGATAGCAAGTCCAGTGAGGTGGTGCTTAATGAATCTGAGTATCTGACCACTTTCCGAGGCGGAATTGGGCCGAAATCGTTGGGCTTGAGAACTGAAGCTTCACGAGTTTCGGCTATTGTGTTCATGAACCACATTAAGCTTGTGGATATTTTTATGGATGCCACGCAATGGTCGACTGTGTTCTGTGGGATTGTTTCGAGAGCATCCACAGTGGAGGTTCTTTCCGCTGGCCTTCCTGGAAACTGCAACGGGGCCTTGCACGTGATGAGCGCTGAATTCCAAGTCCCATCGCCGCTGGTTCCGACTCGCGAAAACTACTTCGTAAGATACTGCAAACAGCACAGCGACGGCACATGGGCTGTGGCTGATGTTTCCTTGGACACTTTGACCCCTTCTCCCATCCCAAAGAGCCGACGGAGACCCTCTGGTTGTTTAATTCAAGAATTGCCCAATGGCTACTCTAAGATCACTTGGGTGGAACATGTAGAGGTCGACGAAACTGGCGTCCCTTCAATGTATAGACCGCTCGTTAATTCAGGCCTCGCTTTTGGCGCAAAACGATGGGTCGCTACTCTTGATAGGCAATGTGAACGTCTAGCCACTTCCATGGCAACCACCATCGCGACCGGCGAATTACGCGTGATGTCGAGTATTGAGGGAAGGAAGAGTATGCTGAAGCTGGCTGAAAGAATGGTGACGAGCTTTTGCGCTGGCGTCGGCGCGTCCAGTATACACGCTTGGACGGCTTTGCCGGCCGCCGGCAGTGATGATGTTCGTGTTGTGACGAGGAAAAGCACCGATGAACCAGGGCGTCCACCTGGTGTTGTGCTTAGCGCGGCTACCTCTTTTTGGATCCCTGTTTCTCCTAAGGTTGTGTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAACAGGGGCTTGGTTCAGGAAATGGCAAACATAGCCAACGGCCGCCACTCTGGAAATTGTGTCTCGTTGCTCCGTGTCAATAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAGAGCTGCACTGATTCCACAGGATCGTACGTTGTTTATGCTCCGGTGGACACTGTTGCAATGAATGTGGTGCTAAGCGGTTGCGACCCGGATTACGTGGCACTTTTACCATCGGGATTCGCCATACTTCCCGACGGACCCGCCGGCACCAACGGCAGAGGAATTCTGGAGGTGGGATCCGGTGGGTCACTAATCACTGTTGCATTTCAAATCCTGGTTGATTCAGTTCCAACGGCGAGACTTTCAATTGGATCGGTTGCCACCGTTAACAGTCTGATTAATTTAAGCAGTAGCAGAGGAAGAAGAGGAGTTGAGAAGTCAAGAACGCACCTTGAAAAGCACTTTCTGCAGCCTGGCGCTGTGGTTTAG 2217 50.97 MFDPDMFDTHHHMLDMAFNTSENELENVRDDDFEAKSGAEILEEGCGSDQQRSKKKRYNRHTQHQIQEMEVFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAMLKADNEKLRAENIRYREAFAHSTCPNCGSSTALGEMSFEDQHLRIENSRLRDEIDRMNGYAPKCAKPLPSSYYHLPSNAPTRSLDLGITNFGQQSCFVGEMYGTADFLRSISRPSEADKPVIVELAVSAMDELTRMAQAGEPLWVPADSKSSEVVLNESEYLTTFRGGIGPKSLGLRTEASRVSAIVFMNHIKLVDIFMDATQWSTVFCGIVSRASTVEVLSAGLPGNCNGALHVMSAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVADVSLDTLTPSPIPKSRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPSMYRPLVNSGLAFGAKRWVATLDRQCERLATSMATTIATGELRVMSSIEGRKSMLKLAERMVTSFCAGVGASSIHAWTALPAAGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVSPKVVFDFLRKEKSRSEWDILSNRGLVQEMANIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPAGTNGRGILEVGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLINLSSSRGRRGVEKSRTHLEKHFLQPGAVV 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1335086 1339175 + CmaCh07G003020.1 Cma07g00302 297617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00302 738 SUPERFAMILY Bet v1-like 237 466 - -
Cma07g00302 738 Pfam START domain 245 465 IPR002913 GO:0008289
Cma07g00302 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 22 720 - -
Cma07g00302 738 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Cma07g00302 738 Coils Coil 106 138 - -
Cma07g00302 738 Gene3D - 43 128 - -
Cma07g00302 738 ProSiteProfiles START domain profile. 235 468 IPR002913 GO:0008289
Cma07g00302 738 SMART HOX_1 53 116 IPR001356 GO:0003677
Cma07g00302 738 SUPERFAMILY Homeodomain-like 44 112 IPR009057 -
Cma07g00302 738 SMART START_1 244 465 IPR002913 GO:0008289
Cma07g00302 738 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Cma07g00302 738 CDD homeodomain 54 113 IPR001356 GO:0003677
Cma07g00302 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 720 IPR042160 -
Cma07g00302 738 SUPERFAMILY Bet v1-like 487 701 - -
Cma07g00302 738 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Cma07g00302 738 CDD START_ArGLABRA2_like 239 464 - -
Cma07g00302 738 Gene3D - 245 470 IPR023393 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00302 Cma13g00725 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00302 Cma-Chr7:1335086 Cma08g00920 Cma-Chr8:5742070 0 dispersed
Cma01g01144 Cma-Chr1:8366072 Cma07g00302 Cma-Chr7:1335086 8.01E-118 wgd
Cma11g01832 Cma-Chr11:12238851 Cma07g00302 Cma-Chr7:1335086 0 wgd
Cma13g00725 Cma-Chr13:6447191 Cma07g00302 Cma-Chr7:1335086 0 wgd
Cma19g00929 Cma-Chr19:8312158 Cma07g00302 Cma-Chr7:1335086 0 wgd
Cma02g00163 Cma-Chr2:753284 Cma07g00302 Cma-Chr7:1335086 0 wgd
Cma20g00628 Cma-Chr20:2926078 Cma07g00302 Cma-Chr7:1335086 0 wgd
Cma03g00527 Cma-Chr3:5028468 Cma07g00302 Cma-Chr7:1335086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35348 PF01852 START 4.60E-52 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00302 K09338 - csv:101209093 1226.46