Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00324 ATGGGCAAAGGATGGGGTCTAACCCTTCGTGATTCCGACCACTCTATTGGGTTCTTCTCAAACAAGCCCCCTCCACCCACTGTCAATTCTTTTCAAAGCGTTATGTTCCAAGGTATTGATTTTCCCGGGAAACTTGGCCGGACTGACGACCACCACCACCACGACAAGCCTGCTCTGCCGCTTCCCGATCACACCCGATTGGCCGTCAACGAGGTCGACTTTTTTTCCGATAAGGAAAGGGTGGTTGATGATAGGTTGGATGAAGACTCCAAACCCCCGGTTCATATCATCGCCACCGCTGTCAATAAAGGCCACAACAATTTCACTGCTCCCACAACTGCCTTCAATCGTGTTAACACTGGTTTGCATCTGTTAACTGCGAACACCGGAAGCGATCAATCGACGGTGGATGATGGGATTTCATCGGATGGAGAAGATAAACGAGCCAAAAGCGAGCTAGCGCAGCTTCAGGTGGAGCTTCAGCGTATGAACGCCGAGAATCACAAGCTGAGGGACATGCTAAGCCATGTGAGAAACAACTACACTACCCTACAAATGCATATCTCCACCTTTATGCAACAGCAACAACAACAAAATCAGGCCTTGGAATCAGGTCATGAGCGACAGCCCACGGAAAAGCATGATGAAGTTGGGAAGGTGGTCATACCGAGGCAATTTATGGATCTGGGACCCTGTGGGAAGACAGGCGAAGGCGATCGTGAATTATTCCATTCATCATCGGATGAAAGAACTGGTTCTGGGTCTCCGTTGAACAACACAAAAACCGGCTCCAAAAAGAGCACCGGAAGAGACCAGGAAATGGGTCCTTCCGATCAGGAGAATTCCAATTTACGATCAGATGGCAAAAGATCCATGGGTAGAGATGAAAGCCCCGAGTCAGAATCTCACGGGTGGGGTGGTCCTAATAAATCCCCCAGATTGAACCCTTCTTCTAAACCACTTGATCAACAATCCACCGAAGCCACCATGAGAAAAGCCCGTGTCTCAGTCCGTGCTCGATCAGAAGCTCCCATGATTTCTGACGGGTGTCAATGGCGAAAATATGGGCAAAAAATGGCTAAAGGAAACCCATGTCCACGGGCGTATTATCGGTGCACAATGGCAGTGGGTTGCCCTGTTCGGAAACAAGTTCAACGTTGCGCTGAAGACACGACTATATTGATAACAACCTATGAGGGTAACCACAACCACCCACTTCCGCCGGCTGCGATGGCCATGGCGTCCACCACCACGGCGGCGGCTAGCATGTTGTTGTCAGGGTCCATGTCAAGTGCGGACCATAATCTAATGAACCCAAGTTTATTGGCTCGAGCCATACTCCCATGTTCCTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACCCCGAACCCATTGCAGTTCCAAAGACCAGCACCCACGCCCTTCCACGTGCCGTTCGAAGCCGGGCAACCACCGTCTGCCGCCGCCCAATTGCCGCAGGTTTTGGGGCAAGTGCTATACAATCAATCAAAATTCTCGGGGCTACAGCTCTCTCATGAGATGGGGGCCAATTCCTCCCATTTGGGTCACCACCAAATTTCACAACCGGCCGCGGCATCATCCCAGCCTAGTGGTGCTTCTTTTGCCGACACGTTAAGTGCCGCCACCGCCGCTATCACCGCGGATCCGAACTTCACAGCCGCTCTGGCCGCCGCTATCTCCTCCATCATAGGCGGAGGTCATTCAAATAATAATAACACCACCCCCACCAATACTACGTCTACATCAAACAACAACGGAAGCAGCAACAACAACAGCAGCAAAATTAGCAGTTTCCCAGGAAAGTAA 1860 50.91 MGKGWGLTLRDSDHSIGFFSNKPPPPTVNSFQSVMFQGIDFPGKLGRTDDHHHHDKPALPLPDHTRLAVNEVDFFSDKERVVDDRLDEDSKPPVHIIATAVNKGHNNFTAPTTAFNRVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKSELAQLQVELQRMNAENHKLRDMLSHVRNNYTTLQMHISTFMQQQQQQNQALESGHERQPTEKHDEVGKVVIPRQFMDLGPCGKTGEGDRELFHSSSDERTGSGSPLNNTKTGSKKSTGRDQEMGPSDQENSNLRSDGKRSMGRDESPESESHGWGGPNKSPRLNPSSKPLDQQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADHNLMNPSLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAPTPFHVPFEAGQPPSAAAQLPQVLGQVLYNQSKFSGLQLSHEMGANSSHLGHHQISQPAAASSQPSGASFADTLSAATAAITADPNFTAALAAAISSIIGGGHSNNNNTTPTNTTSTSNNNGSSNNNSSKISSFPGK 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1412905 1415697 - CmaCh07G003240.1 Cma07g00324 297639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00324 619 SMART WRKY_cls 346 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma07g00324 619 MobiDBLite consensus disorder prediction 192 340 - -
Cma07g00324 619 Pfam WRKY DNA -binding domain 348 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma07g00324 619 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 65 602 - -
Cma07g00324 619 SUPERFAMILY WRKY DNA-binding domain 339 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma07g00324 619 MobiDBLite consensus disorder prediction 248 265 - -
Cma07g00324 619 Gene3D WRKY domain 331 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma07g00324 619 Coils Coil 146 180 - -
Cma07g00324 619 MobiDBLite consensus disorder prediction 527 550 - -
Cma07g00324 619 MobiDBLite consensus disorder prediction 206 221 - -
Cma07g00324 619 MobiDBLite consensus disorder prediction 311 331 - -
Cma07g00324 619 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 65 602 IPR044810 GO:0003700
Cma07g00324 619 MobiDBLite consensus disorder prediction 283 301 - -
Cma07g00324 619 MobiDBLite consensus disorder prediction 583 619 - -
Cma07g00324 619 ProSiteProfiles WRKY domain profile. 341 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00324 Cma-Chr7:1412905 Cma10g00180 Cma-Chr10:826059 2.10E-49 dispersed
Cma11g01814 Cma-Chr11:12117559 Cma07g00324 Cma-Chr7:1412905 4.40E-137 wgd
Cma19g00912 Cma-Chr19:8235872 Cma07g00324 Cma-Chr7:1412905 4.32E-136 wgd
Cma03g00549 Cma-Chr3:5107884 Cma07g00324 Cma-Chr7:1412905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35350 PF03106 WRKY 4.60E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00324 - - mcha:111012275 812.757