Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00329 ATGGATGGTCCTGGCGGAAGTTCTTCAGGTATGATGAATTTTGGAGATCAAAATAATAGTAATAATGGGTTATGTTCTTCCATGATGATGATGATGCCTTTAATGTCCTCTCACCAACACCACCACCACCACCACCACCACCACCACCAAGGAGATGCATGTAATCCATTTCCTCCTCTTCCTTCTCCTAATTACACCACCAACAACATCAGCAACACAAACACTTCTTCTTCTTCTAACCCTATTTGTTACTTAATGGATGAAAACACCACCATCAACAACAACAACAACAACGATAATGGGTGTGGTCATGCAAATTCGTCTTCTTGTGAATTAAAGGCCAAAATTATGGGTCATCCTCACTACCACCGCCTCCTTGCTGCCTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTTGAAGGAGCGTGTGCATCTGCACTAACAATGAGTGGTACGTCTTGTACGGGGTGTATTGGTGAAGATCCGGCTCTTGACCAGTTCATGGAAGCTTATTGCGAGATGCTCACTAAATATGAACAAGAACTTTCCAAACCCTTTAGGGATGCCATGCTTTTTCTTCACCGAATCGAGTGCCAATTCAAAGCCCTCTCTATTTCCTCCTCCGACGCTGTTTGTGGTGAGGCATTTGAAAGGAATGGTTCATCTGAAGAGGAAGTTGATATCAATGGCCACTCTATTGACCCTCAAGCCGAAGACCGTGAACTGAAAGGTCAGCTCCTCCGCAAGTACAGTGGATGCTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTGCCTAAGGAGGCCAGACAACAGCTCCTTGACTGGTGGAGTAGACATTACAAGTGGCCTTATCCATCTGAATCACAGAAGCTAGCCTTGGCTCAATCAACTGGGTTGGATCAAAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAAAGGCACTGGAAACCCTCTGAAGATATGCAGTTTGTAGTGATGGATGGTGGGCATCCACAGTATTACATGGACACCATGTTGGGCAATCCTTTTCCCTTGGATATCTCTCCCACTCTACTCTAA 1098 45.72 MDGPGGSSSGMMNFGDQNNSNNGLCSSMMMMMPLMSSHQHHHHHHHHHHQGDACNPFPPLPSPNYTTNNISNTNTSSSSNPICYLMDENTTINNNNNNDNGCGHANSSSCELKAKIMGHPHYHRLLAAYVNCRKVGAPPEVVARLEGACASALTMSGTSCTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLHRIECQFKALSISSSDAVCGEAFERNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGCLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDGGHPQYYMDTMLGNPFPLDISPTLL 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1431763 1434761 - CmaCh07G003290.1 Cma07g00329 297644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00329 365 ProSiteProfiles ELK domain profile. 247 267 IPR005539 GO:0003677
Cma07g00329 365 MobiDBLite consensus disorder prediction 37 56 - -
Cma07g00329 365 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Cma07g00329 365 CDD homeodomain 279 331 IPR001356 GO:0003677
Cma07g00329 365 ProSitePatterns 'Homeobox' domain signature. 305 328 IPR017970 GO:0000981|GO:0006355
Cma07g00329 365 SUPERFAMILY Homeodomain-like 269 344 IPR009057 -
Cma07g00329 365 SMART ELK_2 247 268 IPR005539 GO:0003677
Cma07g00329 365 Pfam Homeobox KN domain 287 326 IPR008422 GO:0003677|GO:0006355
Cma07g00329 365 Pfam ELK domain 247 268 IPR005539 GO:0003677
Cma07g00329 365 ProSiteProfiles 'Homeobox' domain profile. 267 330 IPR001356 GO:0003677
Cma07g00329 365 PANTHER - 5 354 - -
Cma07g00329 365 Pfam KNOX2 domain 163 209 IPR005541 GO:0003677|GO:0005634
Cma07g00329 365 Gene3D - 272 334 - -
Cma07g00329 365 SMART KNOX2_2 160 211 IPR005541 GO:0003677|GO:0005634
Cma07g00329 365 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 354 - -
Cma07g00329 365 SMART HOX_1 269 334 IPR001356 GO:0003677
Cma07g00329 365 Pfam KNOX1 domain 112 150 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00114 Cma-Chr5:493551 Cma07g00329 Cma-Chr7:1431763 1.30E-78 dispersed
Cma07g00329 Cma-Chr7:1431763 Cma09g00322 Cma-Chr9:1326533 1.74E-88 dispersed
Cma11g01805 Cma-Chr11:12078928 Cma07g00329 Cma-Chr7:1431763 2.76E-120 wgd
Cma03g00553 Cma-Chr3:5146944 Cma07g00329 Cma-Chr7:1431763 9.74E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35351 PF03791 KNOX2 4.40E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00329 - - cmax:111497440 672.544