Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00340 ATGGCGACCTCCTGTTTTGGTTCACTTCGCATTCGTAAATCAAAGAGCAAGCCATTATCAACCCTTTTCTCCTTGAAATCCCAGATGAATTCTGAAATGGAAAACATGGAAAGGAGAAGGTTTGATAGTTTGGAATCGTGGTCGATGATCCTTGAGTCTGAAAATATGGAAACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTCTCTCAGCTCTTCATTGGCAACAAATTTGCCTCCGGTGCGCACAGTCGGATATACCGTGGAATTTATAAGCAGAGAGCCGTTGCTGTGAAGATGGTCAGGATTCCAAACCAAAAGGAGGAAACAAGAGTCAAACTTGAGCAGCAATTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAGCATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCGGTATATTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGAATGTATCTTAACAAGAAAGAGCCATATTCACTCTCGATAGAAACAATACTGAGGCTAGCCCTAGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGGGTAATCCACAGAGACCTCAAATCAAATAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCGGATTTCGGAACCTCCTGCCTCGAAACACAGTGTCGAGAAACAAAAGGGAACATGGGAACTTACAGATGGATGGCGCCGGAGATGATTAAAGAGAAGCCTTACACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTACTGTGGGAGCTCACCACGGTTCTGCTTCCCTTTCAAGGGATGACTCCCGTGCAGGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCATTGCCGGCGAGTTGTCAACCGGCGTTAGCACACCTGATAAAGCGGTGTTGGGCGGCGAATCCATCGAAGCGACCGGATTTCAGCGACATTGTGGCGGCTTTGGAGAAATACGACGAGTGCGTGAAAGAGGGTCTTCCACTTGCACACCATAAAGGATTGGTAAACCGAAACGCCATTATTGAACGCTTGAAAGCTTGCGCCTCAACCAGTTCTTCAATACCTGTACATGCCTGA 1122 46.35 MATSCFGSLRIRKSKSKPLSTLFSLKSQMNSEMENMERRRFDSLESWSMILESENMETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRVKLEQQFKSEVALLSRLFHPSIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTVLLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVAALEKYDECVKEGLPLAHHKGLVNRNAIIERLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1466430 1468148 + CmaCh07G003400.1 Cma07g00340 297655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00340 373 CDD STKc_MAP3K-like 83 330 - -
Cma07g00340 373 Gene3D Transferase(Phosphotransferase) domain 1 159 357 - -
Cma07g00340 373 Pfam Protein tyrosine and serine/threonine kinase 78 330 IPR001245 GO:0004672|GO:0006468
Cma07g00340 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cma07g00340 373 SUPERFAMILY Protein kinase-like (PK-like) 50 330 IPR011009 -
Cma07g00340 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cma07g00340 373 SMART serkin_6 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00340 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Cma07g00340 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Cma07g00340 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Cma07g00340 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cma07g00340 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Cma07g00340 373 ProSiteProfiles Protein kinase domain profile. 76 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00340 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 361 - -
Cma07g00340 373 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01267 Cma-Chr3:8307182 Cma07g00340 Cma-Chr7:1466430 5.67E-113 dispersed
Cma05g00737 Cma-Chr5:4197602 Cma07g00340 Cma-Chr7:1466430 4.58E-99 dispersed
Cma07g00240 Cma-Chr7:1094237 Cma07g00340 Cma-Chr7:1466430 1.78E-113 dispersed
Cma07g00340 Cma-Chr7:1466430 Cma18g00163 Cma-Chr18:825651 3.03E-142 dispersed
Cma03g00564 Cma-Chr3:5194841 Cma07g00340 Cma-Chr7:1466430 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68680 PF07714 PK_Tyr_Ser-Thr 1.00E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00340 - - cmo:103484647 726.857