Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00354 ATGCAAGCATCTCCGAATCGTCAGTCTTCATCTGTGATCCATGAGATGTATCACCAGTCTGTGCAAGGGATGGATTCTTTCTATTTATCTCATTTCCACGTCTTGGAAAACAATGCCTCTCCCGATGCAAGCAGTCAGGGAAACAGTGTTATTTCTTCTTCCTATAAGGATCAGTTCTTTACTCTCGAATCGTTCCCGGCTACTGCTTATCTGAGCGCCTGTAATTCCCCTTCTGCTGTTAGTGTTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGGTCTCAAACTTGCTCTTCTGATCAACATCATTCCTTTGACAACACATGTGGATCGCCGCAAAGTGGATGCTCGGTAACTGATGATGATTATGAATTAAAGCACAAGCTGAAGGAATTAGAGATTTCTTTGTTGGGGCCAGAAACTGATATTGTGAATAGCTGCTACTGTTCTTTCAGGGGTGGGGAGAACCGAGATGCTTCAATGGCAAGGTGGAACTGGAATCAAATGATCGAAACAATTCCTAGACTAAGTCTTCGAGACACACTTATCCGGTGTGCTCAAGCAATTCATGAGGCTGATTTAAATGCGGCGACATCGTTTATGGATGTTTTGGGGCAAATGGTTTCGGTCTCTGGTGATCCAGCCCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTCAGAGCGAGGTTGGAGCGATCTGGAAGTGCAATATACAAGGCCCTAAAGTGCGAAGAGCCGTCAAGCTCTGAACTTATGTCCTATATGTCTATTCTATTCCAGATATGCCCATACTTCAAATTTGCTTACACATCTGCAAATGCTTTCATTTGGGAGGCTATGGTAAATGAACCCGTAATCCACATCATTGATTTTCAAATTGCACAGGGTAGTCAGTATATACCTCTCATTGAGGATCTTGCCAGTCGACCTGGTGGACCCCCAGTTCTTCGCATTACGGGTGTGGATGATTCCCAATCAGCTCATGCTCGGGGAGGGGGACTTCAAATTGTGGGACAGAAGCTAGCTCTACTGGCTCAGTCTAAAGGAATTCCCTTCCAATTTCATGCTGCTGCAATGTCTGGTTGCAAGGTCGAGCACAGTGATCTTAGAATACGACCTGAAGAAGCCTTGGCTGTAAATTTTCCATATGCCTTGCACCACATGCCAGATGAGAGCGTGAGCACACAGAACCATCGAGATCGTCTTCTAAGGCTGGTTAAGAGTCTATCACCGAAGGTAGTAACTATTGTTGAGCAGGAATCCAACACCAACACATCCCCGTTCTTTTTACGTTTTATAGAGACGCTGGACTATTATACTGCTATGTTCGAGTCAATAGACGTAGCTCGTTCAAGAGACGACAAGCAACGAATCAGGGCAGAGCAGCACTGTGTTGCCCGAGACATAGTGAACATGGTAGCATGTGAGGGATTTGAAAGAGTAGAACGTCATGAACTCCATGGGAAGTGGATGATGAGAATGAAAATGGCTGGCTTTACTCAATATCCAATGAGCTCCTCTGTAACTGGAGCCGTCAAGAATTTGTTGAGGGATTACAACGAGAACTACAGACTCCTAGAAGCGGAAGGAGCTCTCAACCTTGGCTGGAAAAACCGAGCAATGGCAACCTCCTCGGCATGGAGATGA 1647 45.9 MQASPNRQSSSVIHEMYHQSVQGMDSFYLSHFHVLENNASPDASSQGNSVISSSYKDQFFTLESFPATAYLSACNSPSAVSVLSSRSPFSPQGSQTCSSDQHHSFDNTCGSPQSGCSVTDDDYELKHKLKELEISLLGPETDIVNSCYCSFRGGENRDASMARWNWNQMIETIPRLSLRDTLIRCAQAIHEADLNAATSFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPSSSELMSYMSILFQICPYFKFAYTSANAFIWEAMVNEPVIHIIDFQIAQGSQYIPLIEDLASRPGGPPVLRITGVDDSQSAHARGGGLQIVGQKLALLAQSKGIPFQFHAAAMSGCKVEHSDLRIRPEEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFFLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELHGKWMMRMKMAGFTQYPMSSSVTGAVKNLLRDYNENYRLLEAEGALNLGWKNRAMATSSAWR 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1515619 1517265 - CmaCh07G003540.1 Cma07g00354 297669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00354 548 Pfam GRAS domain family 178 548 IPR005202 -
Cma07g00354 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 547 IPR005202 -
Cma07g00354 548 ProSiteProfiles GRAS family profile. 169 548 IPR005202 -
Cma07g00354 548 PANTHER SCARECROW-LIKE PROTEIN 13 19 547 IPR030005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00354 Cma-Chr7:1515619 Cma20g00670 Cma-Chr20:3070596 0 dispersed
Cma03g00582 Cma-Chr3:5255162 Cma07g00354 Cma-Chr7:1515619 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35353 PF03514 GRAS 5.20E-124 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00354 - - mcha:111005597 930.243