Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00363 ATGGCCTCCATTGCTGGTCCCAAAGCTTCCTCAAATCCGCCACAAAAAACAGCCAATGGTGCAATGGCTAATGGGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGCTAGAAGCTCAGTAGATCAAGAGAAGAAAACGTCAGAATATGGAAGTGTAAAGAGCAGTATATGTAGAGGGAGCACGAGCAGTGATATAAGTGAGGAGAGCTCTTGCAATAGTTTTAGTAGTAGTATCAGTAAACCTCATAAAGCAAATGATTTGAAATGGGAGGCCATTCAAGTTGTTCGTGCCAAAGATGGGGCGATGGGATTAGGCCATTTTAGACTTTTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGAGGAACAAAATGTCATTTTGCAATGAAGGTTATGGATAAAAATACTTTAGCCAGTCGTAAAAAATCGCTTCGGGCGCAGACCGAAAGAGAAATACTTCAATCCCTTGATCACCCTTTCCTTCCAACATTATACACTCACTTTGAGACAGAGAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGACAGAGGCAACCAGGGAAGCATTTTCCTGAGCATGCAGTGAAATTCTACGTAGCAGAGGTTCTTCTTGCACTGGAGTATCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATATTCTCGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAGTCCAACTCTTGTTAAAAATCTCTCTGCAGAGTCTGAGGCTTTAAGAAAGAACACAGGCTACTGCGTGCAGCCTGCTTGCATTGAGCCATCCTGCATCCAACCATCTTGTGTGGTTCCTACGACCTGCTTTGCACCTCGCCTCTTTTCAAGCAAGTCGAAGAAGGATCGGAAACCGAAAATTGAAATGGGGAATCAGGTCAGTCCATTGCCAGAGCTCATTGCAGAGCCAACTGATGCTCGATCCATGTCTTTCGTTGGTACTCATGAGTACTTGGCACCTGAGATCATCAAGGGTGAAGGGCATGGAAGTGCTGTGGATTGGTGGACTTTTGGTATTTTTCTATATGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGCAAATCGAGCTACGTTGTTCAACATTGTCGGTCAGCCACTTCGGTTTCCTGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTCACAAGAGGATTGCTAGTGAAGAAACCAGAACAAAGATTGGGTAATGAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTTTTTGAAGGTGTGAACTGGGCATTAATACGTTGTGCTACTCCTCCTGAAATCCCAAAGCCGGTTGAGATTGAGAGAATACCGCACGCACACACACACGCACACGCACACGCAGTGGCATCGACCAGTTTAAAGGCCGTTGCTATTGCAGCGGCTGCAGCAGATGAAAAAGCATCCGATAACTATCTCGAGTTTGATTTCTTTTAG 1542 44.68 MASIAGPKASSNPPQKTANGAMANGKQTSTEVDSPHNEARSSVDQEKKTSEYGSVKSSICRGSTSSDISEESSCNSFSSSISKPHKANDLKWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKSLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEHAVKFYVAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCAVSPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFAPRLFSSKSKKDRKPKIEMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSANRATLFNIVGQPLRFPDAPVVSFAAKDLTRGLLVKKPEQRLGNERGATEIKQHPFFEGVNWALIRCATPPEIPKPVEIERIPHAHTHAHAHAVASTSLKAVAIAAAAADEKASDNYLEFDFF 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1552404 1554276 - CmaCh07G003630.1 Cma07g00363 297678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00363 513 Pfam Protein kinase domain 111 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00363 513 Pfam Protein kinase domain 344 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00363 513 Gene3D Transferase(Phosphotransferase) domain 1 194 261 - -
Cma07g00363 513 MobiDBLite consensus disorder prediction 52 84 - -
Cma07g00363 513 Gene3D Phosphorylase Kinase; domain 1 108 193 - -
Cma07g00363 513 PANTHER FLIPPASE KINASE 1-RELATED 54 513 - -
Cma07g00363 513 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 54 513 - -
Cma07g00363 513 MobiDBLite consensus disorder prediction 37 51 - -
Cma07g00363 513 SMART serkin_6 110 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00363 513 MobiDBLite consensus disorder prediction 1 36 - -
Cma07g00363 513 MobiDBLite consensus disorder prediction 1 84 - -
Cma07g00363 513 Gene3D Transferase(Phosphotransferase) domain 1 341 465 - -
Cma07g00363 513 ProSiteProfiles Protein kinase domain profile. 110 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00363 513 CDD STKc_phototropin_like 109 470 - -
Cma07g00363 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Cma07g00363 513 SUPERFAMILY Protein kinase-like (PK-like) 87 475 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00363 Cma-Chr7:1552404 Cma13g00321 Cma-Chr13:3713637 0 dispersed
Cma18g00622 Cma-Chr18:5507489 Cma07g00363 Cma-Chr7:1552404 0 wgd
Cma03g00597 Cma-Chr3:5305588 Cma07g00363 Cma-Chr7:1552404 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68681 PF00069 Pkinase 1.80E-38 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00363 K08286 - csv:101209748 852.432