Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00372 ATGGGCCAAGCACTTGCATTCTTACCAACCATAATCCTAGAGATGGATGAACACAAAGTAGAAGAGAGCTCCATAATTGACACAGTTATGTTTCCAAGACTTGTGAATCCTGAAGGAGATATCCAGATCCATGGCAGCCGTGGTTCTGTTGCTTCCGACCTCACTCATCCCCACAGGGGCGATCCTTGTCTCGTCTTGACTTCAGATCCCAAACCTCGACTCCGGTGGACTACCGATCTTCACGAGCGATTCGTCGATGCTGTTACTCAACTCGGTGGTGCTAACAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCCTCTAAAGATGGTGCATATCTTTTAGGAAGTCCAAGTATCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGACCGATGGCTATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTCGAGGCAGAGAAGCATCTACGAATTCGTCAGGATGCTGAGCGAAGATATTTGGCAATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGAAGGAGCGGTTTCGGACTCGGACAGCAAGAAGTCTCAAGGACTAGATCGTAAGAGCCCGAGAAGTTCCTCGATCGACCCTCTTGGTTTCTATGCTTCGCAATCACAGGGGATGGAAAGAGTGAATGGCACAGAAGAATTGCAAGCTAATCCTCCTTGCCAAAGGGCTGATTGTTCGACCGAAAGCTGCCTAACCTCGAACGAAAGTCCTGGGGGATTGACTATGGAGAAATCTCCTGTGGGAAGCAAGAAAATCATAGTTAACTTGGATTCAGCAAATGCATCTTTGATTTGGGATGAAGCTAGGGAAGGAATACAAGATGCTAATATCATCCAACTTAACCATCACGGCGTATCCGACATGTGGGGATGA 1023 45.55 MGQALAFLPTIILEMDEHKVEESSIIDTVMFPRLVNPEGDIQIHGSRGSVASDLTHPHRGDPCLVLTSDPKPRLRWTTDLHERFVDAVTQLGGANKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLGSPSINNFSPDLPISEMTDGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIEGAVSDSDSKKSQGLDRKSPRSSSIDPLGFYASQSQGMERVNGTEELQANPPCQRADCSTESCLTSNESPGGLTMEKSPVGSKKIIVNLDSANASLIWDEAREGIQDANIIQLNHHGVSDMWG 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1584587 1588469 + CmaCh07G003720.1 Cma07g00372 297687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00372 340 SUPERFAMILY Homeodomain-like 71 127 IPR009057 -
Cma07g00372 340 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 71 126 IPR006447 GO:0003677
Cma07g00372 340 Pfam MYB-CC type transfactor, LHEQLE motif 166 211 IPR025756 -
Cma07g00372 340 Pfam Myb-like DNA-binding domain 74 124 IPR001005 -
Cma07g00372 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 128 IPR017930 -
Cma07g00372 340 MobiDBLite consensus disorder prediction 223 246 - -
Cma07g00372 340 Gene3D - 70 128 - -
Cma07g00372 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 23 335 IPR044848 GO:0003700
Cma07g00372 340 MobiDBLite consensus disorder prediction 265 290 - -
Cma07g00372 340 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 23 335 - -
Cma07g00372 340 MobiDBLite consensus disorder prediction 265 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00372 Cma-Chr7:1584587 Cma14g01894 Cma-Chr14:13402453 1.32E-56 dispersed
Cma03g00610 Cma-Chr3:5365230 Cma07g00372 Cma-Chr7:1584587 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35355 PF00249 Myb_DNA-binding 4.50E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00372 - - csv:105435941 553.903