Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00372 | ATGGGCCAAGCACTTGCATTCTTACCAACCATAATCCTAGAGATGGATGAACACAAAGTAGAAGAGAGCTCCATAATTGACACAGTTATGTTTCCAAGACTTGTGAATCCTGAAGGAGATATCCAGATCCATGGCAGCCGTGGTTCTGTTGCTTCCGACCTCACTCATCCCCACAGGGGCGATCCTTGTCTCGTCTTGACTTCAGATCCCAAACCTCGACTCCGGTGGACTACCGATCTTCACGAGCGATTCGTCGATGCTGTTACTCAACTCGGTGGTGCTAACAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCCTCTAAAGATGGTGCATATCTTTTAGGAAGTCCAAGTATCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGACCGATGGCTATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTCGAGGCAGAGAAGCATCTACGAATTCGTCAGGATGCTGAGCGAAGATATTTGGCAATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGAAGGAGCGGTTTCGGACTCGGACAGCAAGAAGTCTCAAGGACTAGATCGTAAGAGCCCGAGAAGTTCCTCGATCGACCCTCTTGGTTTCTATGCTTCGCAATCACAGGGGATGGAAAGAGTGAATGGCACAGAAGAATTGCAAGCTAATCCTCCTTGCCAAAGGGCTGATTGTTCGACCGAAAGCTGCCTAACCTCGAACGAAAGTCCTGGGGGATTGACTATGGAGAAATCTCCTGTGGGAAGCAAGAAAATCATAGTTAACTTGGATTCAGCAAATGCATCTTTGATTTGGGATGAAGCTAGGGAAGGAATACAAGATGCTAATATCATCCAACTTAACCATCACGGCGTATCCGACATGTGGGGATGA | 1023 | 45.55 | MGQALAFLPTIILEMDEHKVEESSIIDTVMFPRLVNPEGDIQIHGSRGSVASDLTHPHRGDPCLVLTSDPKPRLRWTTDLHERFVDAVTQLGGANKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLGSPSINNFSPDLPISEMTDGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIEGAVSDSDSKKSQGLDRKSPRSSSIDPLGFYASQSQGMERVNGTEELQANPPCQRADCSTESCLTSNESPGGLTMEKSPVGSKKIIVNLDSANASLIWDEAREGIQDANIIQLNHHGVSDMWG | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1584587 | 1588469 | + | CmaCh07G003720.1 | Cma07g00372 | 297687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00372 | 340 | SUPERFAMILY | Homeodomain-like | 71 | 127 | IPR009057 | - | |
Cma07g00372 | 340 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 71 | 126 | IPR006447 | GO:0003677 | |
Cma07g00372 | 340 | Pfam | MYB-CC type transfactor, LHEQLE motif | 166 | 211 | IPR025756 | - | |
Cma07g00372 | 340 | Pfam | Myb-like DNA-binding domain | 74 | 124 | IPR001005 | - | |
Cma07g00372 | 340 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 68 | 128 | IPR017930 | - | |
Cma07g00372 | 340 | MobiDBLite | consensus disorder prediction | 223 | 246 | - | - | |
Cma07g00372 | 340 | Gene3D | - | 70 | 128 | - | - | |
Cma07g00372 | 340 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 23 | 335 | IPR044848 | GO:0003700 | |
Cma07g00372 | 340 | MobiDBLite | consensus disorder prediction | 265 | 290 | - | - | |
Cma07g00372 | 340 | PANTHER | MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN | 23 | 335 | - | - | |
Cma07g00372 | 340 | MobiDBLite | consensus disorder prediction | 265 | 295 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00372 | Cma-Chr7:1584587 | Cma14g01894 | Cma-Chr14:13402453 | 1.32E-56 | dispersed | |
Cma03g00610 | Cma-Chr3:5365230 | Cma07g00372 | Cma-Chr7:1584587 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35355 | PF00249 | Myb_DNA-binding | 4.50E-06 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00372 | - | - | csv:105435941 | 553.903 |