Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00373 ATGAAATGGCGAAAGATCTGGGTAAATCACATGTTTCAACAACAAAGTGCTCATAACTCCAGCTTGATGGAACCCACAAATGGAAGTAATGGTAACAGCAACAACTCGAATTCGGCCTCAAAGCAGAGACTACGATGGACAAACGACCTTCACGAACGATTTGTCAATGCAGTGGCACAACTTGGAGGCCCAGATCGTGCTACACCAAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTGCAGAAATATCGACTCGCGAAATACGTTCCCGACTCCTCATCTAATGGGAAAAAGGCTGACAAGAAGGATTCTGGTGACATTCTATCAAATATTGATGGCTCTTCGGGAATGCAAATCACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGGCTGCATGAACAATTAGAGGTCCAGAGACAGCTACAGTTACGGATTGAAGCTCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGCAGCTCCAGTTGCTTCTCCCTTATCAGCTCCTGTTTCTGGTGACAACTGCCCAGAAACTGATAAAAACGACCCGTCAACACCTGTGCCCACATCCGAGTCTCCTCGCCAAGAGAAAACATCAAAGGAATCTGCCCAAGCCAAGAGTATCTCTATTGATGATTCTTTTCTGTCTCATCACGAACCATTGACACCAGATTCCGGTTGCCATGGCTCCCTACTAGATGACAGCCCAAGGCCAGTGAAGAAGCCAAGACAGTACAGGGATGGTGCATGTGCCAAATCAGAGATGATGCTTGCACATCAAATACTAGAGTCAAGTCTAAACTCCACTCCCAAGGAATCACGCCCCGTTTCTCTAGCCAGGGAAACGATCGATCCTTTGTCTGGAATGTCAATAGGTGATGATGATCGGTTGGATTAA 960 45.83 MKWRKIWVNHMFQQQSAHNSSLMEPTNGSNGNSNNSNSASKQRLRWTNDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYVPDSSSNGKKADKKDSGDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSAAPVASPLSAPVSGDNCPETDKNDPSTPVPTSESPRQEKTSKESAQAKSISIDDSFLSHHEPLTPDSGCHGSLLDDSPRPVKKPRQYRDGACAKSEMMLAHQILESSLNSTPKESRPVSLARETIDPLSGMSIGDDDRLD 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1589213 1592784 + CmaCh07G003730.1 Cma07g00373 297688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00373 319 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Cma07g00373 319 Coils Coil 130 150 - -
Cma07g00373 319 Gene3D - 40 99 - -
Cma07g00373 319 MobiDBLite consensus disorder prediction 283 319 - -
Cma07g00373 319 MobiDBLite consensus disorder prediction 198 214 - -
Cma07g00373 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Cma07g00373 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 14 316 - -
Cma07g00373 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 14 316 IPR044848 GO:0003700
Cma07g00373 319 MobiDBLite consensus disorder prediction 186 268 - -
Cma07g00373 319 MobiDBLite consensus disorder prediction 17 42 - -
Cma07g00373 319 MobiDBLite consensus disorder prediction 100 123 - -
Cma07g00373 319 Pfam MYB-CC type transfactor, LHEQLE motif 127 173 IPR025756 -
Cma07g00373 319 SUPERFAMILY Homeodomain-like 40 95 IPR009057 -
Cma07g00373 319 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00373 - - - cmax:111478721 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00065 Cma-Chr6:360057 Cma07g00373 Cma-Chr7:1589213 1.40E-66 dispersed
Cma07g00373 Cma-Chr7:1589213 Cma14g00462 Cma-Chr14:2240356 1.26E-63 dispersed
Cma03g00611 Cma-Chr3:5371149 Cma07g00373 Cma-Chr7:1589213 2.40E-175 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma19g00216 . 150 347 G2-like Transcription Factor Family AT5G16560 51.5 1.2e-40 164.9
Cma09g00194 CCT 1 164 G2-like Transcription Factor Family AT5G42630 56.8 1.4e-38 157.1
Cma12g00506 CCT,CST 13 151 G2-like Transcription Factor Family AT5G42630 58.6 7.9e-37 151.4
Cma04g02062 . 20 258 G2-like Transcription Factor Family AT1G25550 51.6 2.6e-50 196.4
Cma15g00910 . 20 257 G2-like Transcription Factor Family AT1G25550 53.4 1.0e-49 194.5
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT5G05090 54.6 1.5e-74 276.9
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 5.3e-72 268.5
Cma14g00494 . 1 253 G2-like Transcription Factor Family AT5G05090 60.1 3.3e-66 249.2
Cma06g00034 . 1 274 G2-like Transcription Factor Family AT5G05090 51.7 1.3e-65 247.3
Cma06g01228 . 12 316 G2-like Transcription Factor Family AT4G13640 56.3 1.2e-61 234.2
Cma14g01894 . 44 336 G2-like Transcription Factor Family AT4G13640 50.3 2.1e-53 206.8
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma06g01737 . 38 269 G2-like Transcription Factor Family AT1G69580 50.4 2.3e-40 163.7
Cma05g00862 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 9.1e-37 151.8
Cma19g01121 . 1 379 G2-like Transcription Factor Family AT1G79430 53.8 7.8e-87 318.2
Cma10g01192 . 1 340 G2-like Transcription Factor Family AT1G79430 54.6 4.4e-82 302.4
Cma20g00290 . 1 365 G2-like Transcription Factor Family AT1G79430 52.7 2.5e-77 286.6
Cma02g00669 . 1 359 G2-like Transcription Factor Family AT1G79430 52.4 3.3e-77 286.2
Cma14g01894 . 52 225 G2-like Transcription Factor Family AT1G79430 59.8 9.3e-40 161.8
Cma06g01228 . 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cma06g01737 . 77 285 G2-like Transcription Factor Family AT3G04030 59.4 3.1e-47 186.4
Cma06g01737 . 77 269 G2-like Transcription Factor Family AT5G18240 50.5 1.6e-38 157.5
Cma07g00373 . 76 319 G2-like Transcription Factor Family AT2G01060 60.7 2.8e-56 216.1
Cma03g00611 . 84 327 G2-like Transcription Factor Family AT2G01060 59.3 1.9e-52 203.4
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 1.3e-88 323.9
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT3G10760 60.8 3.0e-88 322.8
Cma06g00034 . 1 277 G2-like Transcription Factor Family AT3G10760 58.8 8.6e-80 294.7
Cma14g00494 . 1 258 G2-like Transcription Factor Family AT3G10760 56.6 2.3e-72 270.0
Cma06g00034 . 1 205 G2-like Transcription Factor Family AT2G40970 62.5 1.5e-60 230.3
Cma07g01099 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.4e-60 228.0
Cma03g00158 . 64 266 G2-like Transcription Factor Family AT2G40970 58.8 1.4e-58 223.8
Cma14g00494 . 1 192 G2-like Transcription Factor Family AT2G40970 59.0 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35356 PF00249 Myb_DNA-binding 1.10E-07 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00373 Cma_Chr07 FPKM 3.803598 5.214125 5.046081 4.563375 14.323043 12.406837 11.814989 8.088541 8.389035 7.630023