Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00373 ATGAAATGGCGAAAGATCTGGGTAAATCACATGTTTCAACAACAAAGTGCTCATAACTCCAGCTTGATGGAACCCACAAATGGAAGTAATGGTAACAGCAACAACTCGAATTCGGCCTCAAAGCAGAGACTACGATGGACAAACGACCTTCACGAACGATTTGTCAATGCAGTGGCACAACTTGGAGGCCCAGATCGTGCTACACCAAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTGCAGAAATATCGACTCGCGAAATACGTTCCCGACTCCTCATCTAATGGGAAAAAGGCTGACAAGAAGGATTCTGGTGACATTCTATCAAATATTGATGGCTCTTCGGGAATGCAAATCACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGGCTGCATGAACAATTAGAGGTCCAGAGACAGCTACAGTTACGGATTGAAGCTCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGCAGCTCCAGTTGCTTCTCCCTTATCAGCTCCTGTTTCTGGTGACAACTGCCCAGAAACTGATAAAAACGACCCGTCAACACCTGTGCCCACATCCGAGTCTCCTCGCCAAGAGAAAACATCAAAGGAATCTGCCCAAGCCAAGAGTATCTCTATTGATGATTCTTTTCTGTCTCATCACGAACCATTGACACCAGATTCCGGTTGCCATGGCTCCCTACTAGATGACAGCCCAAGGCCAGTGAAGAAGCCAAGACAGTACAGGGATGGTGCATGTGCCAAATCAGAGATGATGCTTGCACATCAAATACTAGAGTCAAGTCTAAACTCCACTCCCAAGGAATCACGCCCCGTTTCTCTAGCCAGGGAAACGATCGATCCTTTGTCTGGAATGTCAATAGGTGATGATGATCGGTTGGATTAA 960 45.83 MKWRKIWVNHMFQQQSAHNSSLMEPTNGSNGNSNNSNSASKQRLRWTNDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYVPDSSSNGKKADKKDSGDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSAAPVASPLSAPVSGDNCPETDKNDPSTPVPTSESPRQEKTSKESAQAKSISIDDSFLSHHEPLTPDSGCHGSLLDDSPRPVKKPRQYRDGACAKSEMMLAHQILESSLNSTPKESRPVSLARETIDPLSGMSIGDDDRLD 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1589213 1592784 + CmaCh07G003730.1 Cma07g00373 297688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00373 319 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Cma07g00373 319 Coils Coil 130 150 - -
Cma07g00373 319 Gene3D - 40 99 - -
Cma07g00373 319 MobiDBLite consensus disorder prediction 283 319 - -
Cma07g00373 319 MobiDBLite consensus disorder prediction 198 214 - -
Cma07g00373 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Cma07g00373 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 14 316 - -
Cma07g00373 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 14 316 IPR044848 GO:0003700
Cma07g00373 319 MobiDBLite consensus disorder prediction 186 268 - -
Cma07g00373 319 MobiDBLite consensus disorder prediction 17 42 - -
Cma07g00373 319 MobiDBLite consensus disorder prediction 100 123 - -
Cma07g00373 319 Pfam MYB-CC type transfactor, LHEQLE motif 127 173 IPR025756 -
Cma07g00373 319 SUPERFAMILY Homeodomain-like 40 95 IPR009057 -
Cma07g00373 319 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00065 Cma-Chr6:360057 Cma07g00373 Cma-Chr7:1589213 1.40E-66 dispersed
Cma07g00373 Cma-Chr7:1589213 Cma14g00462 Cma-Chr14:2240356 1.26E-63 dispersed
Cma03g00611 Cma-Chr3:5371149 Cma07g00373 Cma-Chr7:1589213 2.40E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35356 PF00249 Myb_DNA-binding 1.10E-07 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00373 - - cmax:111478721 467.618