Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00382 ATGAGGATTATATGCATTCTAGTATTGATGCTTCTCTCCAGTGGGAGTTCCTCAATTGGAGATAGCAGAAATGTATCCACGAGGCCTGATGTTGTCAACATTGGGGCTTTATTCTCTTTCCATTCTATGATAGGAAAAGTTGGAAAAATCGCGGTAGAAGCTGCCATCAAGGATGTAAATTCTGATCCATCCGTTCTTGGGGGGACGAAGCTGAATCTTACTTTACATGATACCAATTACAGTGGATTTTTGGGCATCGTTGAGTCCTTGCGTTTTATGGAGACGAAAACCGTGGCCATAATTGGCCCCCAAAACTCTGTAACTGCTCATATAATATCTCATATTGCAAATGAGCTGCAAGTTCCTCTGTTGTCGTTTTCGGCGACCGATCCGACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACGTCACAGAATGATCGGTATCAGATGGCTGCAGTAGCTGCAATAGTAGACTACTTTGAATGGAGAGAGGTGGTTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAACGAGAAACGATGTAAGATCTCACTAAAAGTACCATTGAAGCCCGATGCGAGTCGAGACGAGGTCACTAATGCACTTGTTAAGGTGACTTTAACCACGTCTCGAATACTTGTTGTTCACACTTATGAGTCCACAGGTATGGTGGTGCTCAATGTAGCTCAACATCTTGGATTGACTGGACCTGGCTATGTATGGATAGCCACGAACTGGCTTTCTTTGCTACTCGACACGAATTCTGCTCTTCCTCCTGGTTCCATGGAAAGTATTCAAGGACTTGTTGCTTTACGTCTTTATACTCCAAATTCTGCACTCAAAAGGAAATTTGTTTCTAGGTGGACGAATTTGACTAATGGAAAGTCGTCGAGCGGCCAACTCGGATTGAGTACTTACGGATTATATGCGTATGATACTGTATGGATGCTTGCTCATGCAATCAACTCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAAATCTTTCCAAGTTAACTTGGACTGATGTTGGAGCTTTGAACTTGAATGCCATGAGCGTCTTCAATGGTGGGAGGGCACTACTACAGAATATTTTAGACGTAAATTTCACTGGAATAACAGGTCCAGTTGAGTTCACTCCAGACCGGGACTTGATTCGCCCTGCATTCGAAGTGATCAATATTATCGGCTCAGGGGAAAGGCGAATTGGTTACTGGTCTAACTATTCTGGCTTGTCGATTGTGCCTCCTGAAACCCTTTACTCAAAACCACCTAATGAATCCAGTTTAAACCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAGCAGAGAAGCCTCGCGGGTGGGCGTTTCCAAACGGTGGAGCGCATTTGAGAATTGGTGTCCCAAGACGAGTCAGTTACCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCAGTGGCTACTGCATTGATGTCTTCACTGCAGCAATTAACTTGTTGCCTTATACGGTACCTTATAAGTTAATTGCTTATGGGGATGGCCTTACTAATCCAAGAACAACCGAGCTTGTTCGCCAAATCACGACCGGGGTCTTCGATGCAGCGATAGGCGACATTGCAATTATCACGAACCGAACCCGGATGGCGGATTTTACACAACCATACATCGAGTCCGGCTTAGTAGTCATAGCCCCAGTCAAGAAGTTGAACTCTAATGCTTGGGCCTTTTTACGGCCGTTCACTGCAAAAATGTGGTGTATTACTGCTGTTTCTTTTCTTGTAGTAGGCGTAGTTGTTTGGATTTTGGAGCATAGGATCAATGATGATTTTCGTGGCCCTCCGAAGAGACAAGTTATTACTATTCTTTGGTTCAGCTTCTCAACTATGTTCTTTTCTCATCGGGAAAACACGGTCAGTACCCTTGGTCGCCTCGTGCTGCTCATATGGTTATTTGTTGTTCTTATTATAAACTCAAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTTCTGTCAAAGGGATTGAAACTTTGGTTTCAAACAATGACCCAATTGGGTACCAGCAGGGTTCGTTTACTCGAAACTACTTGATTGAGGAACTTGGCATTCACGAATCGAGGCTTGTTCCACTCATCTCAATAGAACATTATGTTAAAGCCTTGAATGATGGTCCACAGAAGAATGGTGTTGCTGCTATTGTCGACGAGCGATCATATGCCGAGCTCTTCCTTTCAACTCATTGCGAATTCAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGCAACTCTCCTTTAGCAGTCGACATGTCGACCGCTATTCTACGACTGTCCGAAAATGGGGATCTTCAAAGAATCCATGATAAATGGTTAATGAAAAGTGCTTGCACATCACAAGTCTCCAAATTTGAGGTGGATCGACTTCAGCTCGATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGCTTGCTCGCTCTAGCGATATATGTCTTTCAAATGTTGCGCCAATACAGCAAGCATTACTCAGAAGAACTTGAATCTTCTGAGCAAACCTCTCGATCTCGATCTCGATCTAAAAGCCTGCATAGATTTCTTTCTTTTGCAGATGAAAAGGAAGATGTCTTTAAGAGTCGATCCAAGCGACGACAGATGCAGGAGGCTTCAGTTAGAAACATGAATGGAGATAATTCAGCAGACAGTTCAAGAAAATATGACAATTGTGATGCTGATGGTACGTATTGA 2808 43.09 MRIICILVLMLLSSGSSSIGDSRNVSTRPDVVNIGALFSFHSMIGKVGKIAVEAAIKDVNSDPSVLGGTKLNLTLHDTNYSGFLGIVESLRFMETKTVAIIGPQNSVTAHIISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDRYQMAAVAAIVDYFEWREVVAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTNALVKVTLTTSRILVVHTYESTGMVVLNVAQHLGLTGPGYVWIATNWLSLLLDTNSALPPGSMESIQGLVALRLYTPNSALKRKFVSRWTNLTNGKSSSGQLGLSTYGLYAYDTVWMLAHAINSFLNEGGNLSFSNLSKLTWTDVGALNLNAMSVFNGGRALLQNILDVNFTGITGPVEFTPDRDLIRPAFEVINIIGSGERRIGYWSNYSGLSIVPPETLYSKPPNESSLNQKLYDVVWPGQAAEKPRGWAFPNGGAHLRIGVPRRVSYQEFVSQVEGTDMFSGYCIDVFTAAINLLPYTVPYKLIAYGDGLTNPRTTELVRQITTGVFDAAIGDIAIITNRTRMADFTQPYIESGLVVIAPVKKLNSNAWAFLRPFTAKMWCITAVSFLVVGVVVWILEHRINDDFRGPPKRQVITILWFSFSTMFFSHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSSVKGIETLVSNNDPIGYQQGSFTRNYLIEELGIHESRLVPLISIEHYVKALNDGPQKNGVAAIVDERSYAELFLSTHCEFSIVGQEFTKNGWGFAFQRNSPLAVDMSTAILRLSENGDLQRIHDKWLMKSACTSQVSKFEVDRLQLDSFWGLFLICGLACLLALAIYVFQMLRQYSKHYSEELESSEQTSRSRSRSKSLHRFLSFADEKEDVFKSRSKRRQMQEASVRNMNGDNSADSSRKYDNCDADGTY 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1636511 1641458 - CmaCh07G003820.1 Cma07g00382 297697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00382 935 Gene3D - 50 399 - -
Cma07g00382 935 SUPERFAMILY Periplasmic binding protein-like I 28 462 IPR028082 -
Cma07g00382 935 Pfam Ligand-gated ion channel 812 844 IPR001320 GO:0015276|GO:0016020
Cma07g00382 935 PANTHER GLUTAMATE RECEPTOR 3.6 13 925 - -
Cma07g00382 935 MobiDBLite consensus disorder prediction 898 935 - -
Cma07g00382 935 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Cma07g00382 935 CDD GluR_Plant 471 811 - -
Cma07g00382 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Cma07g00382 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Cma07g00382 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Cma07g00382 935 PIRSF IGluLR_plant 1 933 IPR017103 -
Cma07g00382 935 Pfam Bacterial extracellular solute-binding proteins, family 3 528 811 IPR001638 -
Cma07g00382 935 Gene3D - 582 705 - -
Cma07g00382 935 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Cma07g00382 935 MobiDBLite consensus disorder prediction 908 922 - -
Cma07g00382 935 Gene3D - 147 424 - -
Cma07g00382 935 Gene3D - 749 818 - -
Cma07g00382 935 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Cma07g00382 935 Pfam Receptor family ligand binding region 50 409 IPR001828 -
Cma07g00382 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 925 - -
Cma07g00382 935 Gene3D - 469 581 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00620 Cma07g00382 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00382 Cma-Chr7:1636511 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma01g02028 Cma-Chr1:12944004 Cma07g00382 Cma-Chr7:1636511 0 wgd
Cma03g00620 Cma-Chr3:5405784 Cma07g00382 Cma-Chr7:1636511 0 wgd
Cma07g00382 Cma-Chr7:1636511 Cma09g00038 Cma-Chr9:166741 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00382 K05387 - csv:101213408 1548.49