Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00387 ATGGCGTTTTCCGACGAGAACAATCCCAACTTGATAATCAAACCCACTGGGTTTCTTCCAGGAGGAGGGTTGGAGAACAGGGGGAGGGCCTTTGGGCAGGAGATTAGTAGAACTAATAATCGAAGAGCTCTTAATGATATCAATCAGAATTATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGCTCTCTCAGGGAAGCAAGAAATCTATGAGAAAAAGCAGGTTGATCCATTTCATAGGCCGATTACGAGGAAGTTTGCTGCTCAGATTGCGAGTAGTCAACAGTATCATCAGCCACAAGGAACTAATAAGCCTAACTCATTTCTTTCAAACTCAAATGCGTTTGGACATTCCATATTTGTAGACGAGGATTGCAAAACAGTAGAAAATGATCATCCAGTTCCCATGTTCTTGGAGAAACCAGAACCATCATCATTGTCTCAGGAATCCACCCAAATGGCGGAGGTTGAAATGGAGGATATCACAGATGAACACGACGACCCGGTAATCGATATCGATGGTGTCGATTCCACGAACCCGCTTGCCGTTGTCGATTATGTCGATGAACTTTATGCACACTACAGAAAACTAGAGAATTCGAGCTGTGTTTCCCCGAATTACATGACGAAACAATTCGACATTAATGAGAAAATGAGAGCTATACTGATCGACTGGCTTATTGAAGTGCACGACAAGTTTGATCTCATTGGAGAAACATTGTTTCTCACTGTGAATCTGATAGACAGATTCTTGTCGCAAAAAACAGTTGTGAGGAAGAAACTTCAGCTGGTTGGTTTGGTTTCTATGCTCTTAGCTTGCAAATATGAAGAAGTTTCTATCCCTGTTGTCGGAGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGGAAAGAAGTTCTTGAAATGGAGACAGTGATGCTCAACTGTCTACAGTTCAATATGTCGGTTCCGACACCCTTTGTGTTCCTCCGAAGGTTCCTTAAAGCAGCTCAATCTAACAATAAGCTTGAGCTATTGGCATTCTTCTTGATCGAGCTCTCACTCGTGGAGTATGAAATGCTGCGATTCCCGCCCTCTCTGCTGGCGGCAGCGGCGACTTACACAGCTCAATGTACTCTCACCGGAGTCAAGGGGTGGAGCCGGACATGCCAGTGGCATTCTAGCTACTCAGAAGATCAGCTACTAGAATGCTCGAGACTGATGGTGGGGTTCCATCAGAGAGCGGCGACGGGGAAGCTCACCGGGGTTCATCGGAAGTACTGTACATCGAAATTTAACTACACGGCGAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1329 44.24 MAFSDENNPNLIIKPTGFLPGGGLENRGRAFGQEISRTNNRRALNDINQNYQAYPCVVNKRALSGKQEIYEKKQVDPFHRPITRKFAAQIASSQQYHQPQGTNKPNSFLSNSNAFGHSIFVDEDCKTVENDHPVPMFLEKPEPSSLSQESTQMAEVEMEDITDEHDDPVIDIDGVDSTNPLAVVDYVDELYAHYRKLENSSCVSPNYMTKQFDINEKMRAILIDWLIEVHDKFDLIGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSIPVVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLRRFLKAAQSNNKLELLAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTLTGVKGWSRTCQWHSSYSEDQLLECSRLMVGFHQRAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1663930 1666482 + CmaCh07G003870.1 Cma07g00387 297702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00387 442 SUPERFAMILY Cyclin-like 178 314 IPR036915 -
Cma07g00387 442 PANTHER CYCLINS 29 437 IPR039361 -
Cma07g00387 442 Pfam Cyclin, N-terminal domain 190 315 IPR006671 -
Cma07g00387 442 SUPERFAMILY Cyclin-like 316 434 IPR036915 -
Cma07g00387 442 PANTHER CYCLIN-B2-1 29 437 - -
Cma07g00387 442 PIRSF Cyclin_A_B_D_E 24 442 IPR039361 -
Cma07g00387 442 SMART cyclin_7 321 403 IPR013763 -
Cma07g00387 442 SMART cyclin_7 224 308 IPR013763 -
Cma07g00387 442 ProSitePatterns Cyclins signature. 219 250 IPR006671 -
Cma07g00387 442 Gene3D - 203 315 - -
Cma07g00387 442 CDD CYCLIN 315 402 IPR013763 -
Cma07g00387 442 Pfam Cyclin, C-terminal domain 317 432 IPR004367 -
Cma07g00387 442 Gene3D - 190 429 - -
Cma07g00387 442 SMART Cyclin_C_2 317 434 IPR004367 -
Cma07g00387 442 CDD CYCLIN 218 307 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00387 Cma-Chr7:1663930 Cma07g01100 Cma-Chr7:5953674 9.84E-81 dispersed
Cma01g02011 Cma-Chr1:12878049 Cma07g00387 Cma-Chr7:1663930 1.90E-166 wgd
Cma03g00627 Cma-Chr3:5435253 Cma07g00387 Cma-Chr7:1663930 0 wgd
Cma07g00387 Cma-Chr7:1663930 Cma09g00055 Cma-Chr9:252777 2.46E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00387 K21777 - csv:101216622 761.14