Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00400 | ATGGCGGAGAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTCAAGGCCGTCCAGTTGCCTAACATGGATATTATATCGGAGCGTCTTCGTCGGTGCTTCACCGCTTGTGGTACTCTCGACTACTCTGCCATTAAATCCGTCGGAACCAACTCCCGTTCCGTCGGCGAGGGGAAAGTCCACCGTGGCCATAGCAAAATCATCACCAGTGATCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCACGGACTCGCGTGATAAAGAATTCCCAGAATCCCCATTGGAACGAGCATTTTGTTATCCCTCTTGCACAGAAAATGGCTGAAATAGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAGGTTATGGGGACGGTCAAGTTCCCAGCTCGGCAAATTGCCTCTGGTTTGACCATTAGTGGGTGGTTTCCGGTGATTGGCTCCAATGGCAAGCCGCCGAAGCCTGACACGAAACTCCAAATCGAAATGAAGTTTACCTCGGTCGAGATGAACCCGGTGTATCGTCATGGTATCGCCGGAGATCCAGAGCATAAGGGTGTGCGGCACACGTATTTTCCTGTTAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCACAGATTGAATTGGATGGTGGGAAGGTTTTTAGCCAAGGGAAATGTTGGGAGGATATTTGCCATGCTATAACAGAGGCTCATCATATGATTTATATTGTCGGATGGTCTGTTTTTCATAAGGTGAGGCTGGTTAGAGAGCCGAGCAGACCACTGCCCCGAGGCGGGGATTTGACTCTTGGTGAGCTGCTCAAATACAAATCAGAAGAGGGTGTTCGAGTTTTGTTGATGGTTTGGGATGATAAGACTTCTCATGACAAGTTCTTCATCAGCACGGAAGGATTGATGCAGACGCATGACGAGGAAACCTACAAATTTTTCAAGCATTCTTCTGTTATCTGTGTGCTTTCGCCTCGCTATCCGAGTGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGAACTGTCTTCACACACCATCAAAAGTGTGTCCTAGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCATTTCTTGGAGGTCTTGATCTCTGTGATGGTCGTTACGATACACCTGAGCATCGATTGTTTCGTGACCTCGACACAGTATTTAAGGAAGATTTTCACAATCCTGCAATTCCTCCTGGAACCAATGGTCCAAGGGAACCATGGCATGACTTGCACTGTCGGATCGATGGGCCAGCTGCATACGACTTGCTTATGAACTTTGAGCAACGTTGGAACAAAGCCACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTAATCACTGGCATGATGCTTTAATAAAGATAGAACGCATATCATGGATACTAAGCCCTAAACTAAATATGTTACCGGATGGTTCAACAAAAGTTCCAGACGATGAACCTAATGTATATGTTTCGAAGGAAGAAGATCCCGAAAACTGGCATGTTCAGATTTTCCGATCCATCGACTCTGGATCAGTCAAAGGGTTTCCAAAAGATGCTCATCTTGCCGTGTCGCAGAATCTTGTATGTGCAAAAAACTTAGCTATAGAGAAAAGCATCGAAATGGCATATATCCAGGCTATCAGATCGGCGCAACATTTCATTTATATCGAAAATCAGTATTTTATCGGATCGTCGTATGGATGGCCAGGATATAAAAATGCTGGGGCTGATCATCTCATTCCCATGGAGTTGGCCCTTAAAATTGCGAGCAAAATTAGAGCCAGGGAAAGATTTGTTGTATATATTGTTATACCAATGTGGCCCGAGGGAGATCCGAATAGCGGTGCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTAAAGTCATCAGAGCAACCAGATTTGCACCCTCAAGACTATCTAAATTTCTACTGTCTTGGTAAACGCGAAGAAATTCCTGCAAATGGACCCAACATCGACAATGCAACGGCGTGTAATTCACTAAAACATAAACGGTTTATGATTTACGTTCACGCCAAGGGAATGATAGTAGATGATGAATATGTAATCATTGGGTCTGCTAATATCAACCAAAGATCTATGGCTGGGACAAAGGATACCGAGATAGCTACCGGCGCCTATCAGCCGCATCACACGTGGGCAAAGAAGCAGAAACACCCACATGGTCAGATTTACGGGTATAGAATGTCGTTATGGAGCGAGCATCTCGGTATGCTCGATCCCATTTTTGAGGAGCCAAAAACTTTGGAATGTGTACGAAGAGTGAACAAGATTGCTGAGGATAACTGGAAGATATTTACAGCGGATGAATTCGCGACATTGCAAGGCCACCTTCTCAGGCTCATTCTGCAATGGTGCTGTCTGCAAGTTTGGTCTTCGGCTCTGTTTCTCTCCTCGCACAAGCCACGACGGCGATTTGCGACTGCTGCCGCTCGTGGAGAAGCCGTATCTGTGTTGCTCATTAGCTGTTTGCCTTCTGATTTCGTTGTGGAAAATGGCACTCTCGATCTCCTTCCCCCTGGAGGGCTCCTTCAAGGTCAAGATCTAGATCTAGGTCGCGATCGAGGCCCAGGTCTAGATCCAGATCATGGTCAAGGCCAAGGTCTCAAAGTCGTGGAAGATCAAGGTCCAGAAGTCGTGGGAGGTGCGTTTCTTCAGCTGGAACTCTCTTCTTCCAGGGAGAATGCCCTTAACCCAGGGAATACGCTTTATGTCACCGGTCTATCTGCGAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTAGCTTCTTGTTTCCTTGTGGTTGAACCACGAACACGAATTTCCCGGGGTTTTGCATTTGTCCAGATGGACAATGTTGATGATGCTAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGTCACGGAGGAAACGGCCAAGAACTCCAACGCCTGGACACTATTTGGGGTTGAAAAACACCAGAGACTCTGGCTACCGTGATGATCGAGGAAGGTACCGTGGTGGCTCTCTTCGTGATGACTATGGTTATCGTCGGTCTCCAAGACGCTCACCATATCGGGGTACTCGAGAGTACTCCCCTCGACATTCCCCCCTTTATGGTGGAAGATCAAGGAGGGATCACTCCAGGTCGCCTCCTTACTCCCCGTATGGCAGCCCGGATAGCAGGTATCCTCGTGGCTCCAGGTGA | 3321 | 47.09 | MAESSEEVYLHGDLDLKIFKAVQLPNMDIISERLRRCFTACGTLDYSAIKSVGTNSRSVGEGKVHRGHSKIITSDPYVTVRVPQATVARTRVIKNSQNPHWNEHFVIPLAQKMAEIEFQVKDDDVFGAEVMGTVKFPARQIASGLTISGWFPVIGSNGKPPKPDTKLQIEMKFTSVEMNPVYRHGIAGDPEHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGKVFSQGKCWEDICHAITEAHHMIYIVGWSVFHKVRLVREPSRPLPRGGDLTLGELLKYKSEEGVRVLLMVWDDKTSHDKFFISTEGLMQTHDEETYKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFKEDFHNPAIPPGTNGPREPWHDLHCRIDGPAAYDLLMNFEQRWNKATRWTEFGLRCRRINHWHDALIKIERISWILSPKLNMLPDGSTKVPDDEPNVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDAHLAVSQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRARERFVVYIVIPMWPEGDPNSGAMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPQDYLNFYCLGKREEIPANGPNIDNATACNSLKHKRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKQKHPHGQIYGYRMSLWSEHLGMLDPIFEEPKTLECVRRVNKIAEDNWKIFTADEFATLQGHLLRLILQWCCLQVWSSALFLSSHKPRRRFATAAARGEAVSVLLISCLPSDFVVENGTLDLLPPGGLLQGQDLDLGRDRGPGLDPDHGQGQGLKVVEDQGPEVVGGAFLQLELSSSRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDSGYRDDRGRYRGGSLRDDYGYRRSPRRSPYRGTREYSPRHSPLYGGRSRRDHSRSPPYSPYGSPDSRYPRGSR | 1106 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1719675 | 1729521 | - | CmaCh07G004000.1 | Cma07g00400 | 297715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00400 | 1106 | SMART | pld_4 | 701 | 728 | IPR001736 | GO:0003824 | |
Cma07g00400 | 1106 | SMART | pld_4 | 356 | 391 | IPR001736 | GO:0003824 | |
Cma07g00400 | 1106 | SMART | C2_3c | 13 | 150 | IPR000008 | - | |
Cma07g00400 | 1106 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 938 | 1007 | IPR000504 | GO:0003723 | |
Cma07g00400 | 1106 | Gene3D | Endonuclease Chain A | 230 | 465 | - | - | |
Cma07g00400 | 1106 | Pfam | Phospholipase D Active site motif | 356 | 391 | IPR001736 | GO:0003824 | |
Cma07g00400 | 1106 | Pfam | Phospholipase D Active site motif | 702 | 728 | IPR001736 | GO:0003824 | |
Cma07g00400 | 1106 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 936 | 1014 | IPR000504 | GO:0003723 | |
Cma07g00400 | 1106 | MobiDBLite | consensus disorder prediction | 1031 | 1067 | - | - | |
Cma07g00400 | 1106 | Pfam | Phospholipase D C terminal | 777 | 815 | IPR024632 | - | |
Cma07g00400 | 1106 | Gene3D | C2 domain | 11 | 182 | IPR035892 | - | |
Cma07g00400 | 1106 | SUPERFAMILY | RNA-binding domain, RBD | 931 | 1045 | IPR035979 | GO:0003676 | |
Cma07g00400 | 1106 | Pfam | C2 domain | 12 | 153 | IPR000008 | - | |
Cma07g00400 | 1106 | PANTHER | PHOSPHOLIPASE D DELTA | 5 | 818 | - | - | |
Cma07g00400 | 1106 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 701 | 728 | IPR001736 | GO:0003824 | |
Cma07g00400 | 1106 | PANTHER | PHOSPHOLIPASE D | 5 | 818 | IPR015679 | - | |
Cma07g00400 | 1106 | SUPERFAMILY | Phospholipase D/nuclease | 204 | 459 | - | - | |
Cma07g00400 | 1106 | Gene3D | Endonuclease Chain A | 524 | 753 | - | - | |
Cma07g00400 | 1106 | Gene3D | - | 922 | 1064 | IPR012677 | - | |
Cma07g00400 | 1106 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 356 | 391 | IPR001736 | GO:0003824 | |
Cma07g00400 | 1106 | CDD | RRM_RBMX_like | 935 | 1014 | - | - | |
Cma07g00400 | 1106 | ProSiteProfiles | C2 domain profile. | 40 | 151 | IPR000008 | - | |
Cma07g00400 | 1106 | CDD | C2_plant_PLD | 8 | 174 | - | - | |
Cma07g00400 | 1106 | SMART | rrm1_1 | 937 | 1010 | IPR000504 | GO:0003723 | |
Cma07g00400 | 1106 | MobiDBLite | consensus disorder prediction | 1008 | 1106 | - | - | |
Cma07g00400 | 1106 | SUPERFAMILY | Phospholipase D/nuclease | 552 | 781 | - | - | |
Cma07g00400 | 1106 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 10 | 175 | IPR035892 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00646 | Cma-Chr1:3354657 | Cma07g00400 | Cma-Chr7:1719675 | 1.73E-32 | dispersed | |
Cma07g00400 | Cma-Chr7:1719675 | Cma17g00003 | Cma-Chr17:12987 | 0 | dispersed | |
Cma13g00084 | Cma-Chr13:640341 | Cma07g00400 | Cma-Chr7:1719675 | 6.93E-33 | dispersed | |
Cma03g00650 | Cma-Chr3:5502224 | Cma07g00400 | Cma-Chr7:1719675 | 4.31E-48 | transposed | |
Cma03g00651 | Cma-Chr3:5505034 | Cma07g00400 | Cma-Chr7:1719675 | 0 | transposed | |
Cma03g00649 | Cma-Chr3:5501095 | Cma07g00400 | Cma-Chr7:1719675 | 8.73E-37 | wgd | |
Cma05g00328 | Cma-Chr5:1422755 | Cma07g00400 | Cma-Chr7:1719675 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00400 | K01115 | - | csv:101217251 | 1516.13 |