Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00400 ATGGCGGAGAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTCAAGGCCGTCCAGTTGCCTAACATGGATATTATATCGGAGCGTCTTCGTCGGTGCTTCACCGCTTGTGGTACTCTCGACTACTCTGCCATTAAATCCGTCGGAACCAACTCCCGTTCCGTCGGCGAGGGGAAAGTCCACCGTGGCCATAGCAAAATCATCACCAGTGATCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCACGGACTCGCGTGATAAAGAATTCCCAGAATCCCCATTGGAACGAGCATTTTGTTATCCCTCTTGCACAGAAAATGGCTGAAATAGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAGGTTATGGGGACGGTCAAGTTCCCAGCTCGGCAAATTGCCTCTGGTTTGACCATTAGTGGGTGGTTTCCGGTGATTGGCTCCAATGGCAAGCCGCCGAAGCCTGACACGAAACTCCAAATCGAAATGAAGTTTACCTCGGTCGAGATGAACCCGGTGTATCGTCATGGTATCGCCGGAGATCCAGAGCATAAGGGTGTGCGGCACACGTATTTTCCTGTTAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCACAGATTGAATTGGATGGTGGGAAGGTTTTTAGCCAAGGGAAATGTTGGGAGGATATTTGCCATGCTATAACAGAGGCTCATCATATGATTTATATTGTCGGATGGTCTGTTTTTCATAAGGTGAGGCTGGTTAGAGAGCCGAGCAGACCACTGCCCCGAGGCGGGGATTTGACTCTTGGTGAGCTGCTCAAATACAAATCAGAAGAGGGTGTTCGAGTTTTGTTGATGGTTTGGGATGATAAGACTTCTCATGACAAGTTCTTCATCAGCACGGAAGGATTGATGCAGACGCATGACGAGGAAACCTACAAATTTTTCAAGCATTCTTCTGTTATCTGTGTGCTTTCGCCTCGCTATCCGAGTGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGAACTGTCTTCACACACCATCAAAAGTGTGTCCTAGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCATTTCTTGGAGGTCTTGATCTCTGTGATGGTCGTTACGATACACCTGAGCATCGATTGTTTCGTGACCTCGACACAGTATTTAAGGAAGATTTTCACAATCCTGCAATTCCTCCTGGAACCAATGGTCCAAGGGAACCATGGCATGACTTGCACTGTCGGATCGATGGGCCAGCTGCATACGACTTGCTTATGAACTTTGAGCAACGTTGGAACAAAGCCACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTAATCACTGGCATGATGCTTTAATAAAGATAGAACGCATATCATGGATACTAAGCCCTAAACTAAATATGTTACCGGATGGTTCAACAAAAGTTCCAGACGATGAACCTAATGTATATGTTTCGAAGGAAGAAGATCCCGAAAACTGGCATGTTCAGATTTTCCGATCCATCGACTCTGGATCAGTCAAAGGGTTTCCAAAAGATGCTCATCTTGCCGTGTCGCAGAATCTTGTATGTGCAAAAAACTTAGCTATAGAGAAAAGCATCGAAATGGCATATATCCAGGCTATCAGATCGGCGCAACATTTCATTTATATCGAAAATCAGTATTTTATCGGATCGTCGTATGGATGGCCAGGATATAAAAATGCTGGGGCTGATCATCTCATTCCCATGGAGTTGGCCCTTAAAATTGCGAGCAAAATTAGAGCCAGGGAAAGATTTGTTGTATATATTGTTATACCAATGTGGCCCGAGGGAGATCCGAATAGCGGTGCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTAAAGTCATCAGAGCAACCAGATTTGCACCCTCAAGACTATCTAAATTTCTACTGTCTTGGTAAACGCGAAGAAATTCCTGCAAATGGACCCAACATCGACAATGCAACGGCGTGTAATTCACTAAAACATAAACGGTTTATGATTTACGTTCACGCCAAGGGAATGATAGTAGATGATGAATATGTAATCATTGGGTCTGCTAATATCAACCAAAGATCTATGGCTGGGACAAAGGATACCGAGATAGCTACCGGCGCCTATCAGCCGCATCACACGTGGGCAAAGAAGCAGAAACACCCACATGGTCAGATTTACGGGTATAGAATGTCGTTATGGAGCGAGCATCTCGGTATGCTCGATCCCATTTTTGAGGAGCCAAAAACTTTGGAATGTGTACGAAGAGTGAACAAGATTGCTGAGGATAACTGGAAGATATTTACAGCGGATGAATTCGCGACATTGCAAGGCCACCTTCTCAGGCTCATTCTGCAATGGTGCTGTCTGCAAGTTTGGTCTTCGGCTCTGTTTCTCTCCTCGCACAAGCCACGACGGCGATTTGCGACTGCTGCCGCTCGTGGAGAAGCCGTATCTGTGTTGCTCATTAGCTGTTTGCCTTCTGATTTCGTTGTGGAAAATGGCACTCTCGATCTCCTTCCCCCTGGAGGGCTCCTTCAAGGTCAAGATCTAGATCTAGGTCGCGATCGAGGCCCAGGTCTAGATCCAGATCATGGTCAAGGCCAAGGTCTCAAAGTCGTGGAAGATCAAGGTCCAGAAGTCGTGGGAGGTGCGTTTCTTCAGCTGGAACTCTCTTCTTCCAGGGAGAATGCCCTTAACCCAGGGAATACGCTTTATGTCACCGGTCTATCTGCGAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTAGCTTCTTGTTTCCTTGTGGTTGAACCACGAACACGAATTTCCCGGGGTTTTGCATTTGTCCAGATGGACAATGTTGATGATGCTAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGTCACGGAGGAAACGGCCAAGAACTCCAACGCCTGGACACTATTTGGGGTTGAAAAACACCAGAGACTCTGGCTACCGTGATGATCGAGGAAGGTACCGTGGTGGCTCTCTTCGTGATGACTATGGTTATCGTCGGTCTCCAAGACGCTCACCATATCGGGGTACTCGAGAGTACTCCCCTCGACATTCCCCCCTTTATGGTGGAAGATCAAGGAGGGATCACTCCAGGTCGCCTCCTTACTCCCCGTATGGCAGCCCGGATAGCAGGTATCCTCGTGGCTCCAGGTGA 3321 47.09 MAESSEEVYLHGDLDLKIFKAVQLPNMDIISERLRRCFTACGTLDYSAIKSVGTNSRSVGEGKVHRGHSKIITSDPYVTVRVPQATVARTRVIKNSQNPHWNEHFVIPLAQKMAEIEFQVKDDDVFGAEVMGTVKFPARQIASGLTISGWFPVIGSNGKPPKPDTKLQIEMKFTSVEMNPVYRHGIAGDPEHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGKVFSQGKCWEDICHAITEAHHMIYIVGWSVFHKVRLVREPSRPLPRGGDLTLGELLKYKSEEGVRVLLMVWDDKTSHDKFFISTEGLMQTHDEETYKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFKEDFHNPAIPPGTNGPREPWHDLHCRIDGPAAYDLLMNFEQRWNKATRWTEFGLRCRRINHWHDALIKIERISWILSPKLNMLPDGSTKVPDDEPNVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDAHLAVSQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRARERFVVYIVIPMWPEGDPNSGAMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPQDYLNFYCLGKREEIPANGPNIDNATACNSLKHKRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKQKHPHGQIYGYRMSLWSEHLGMLDPIFEEPKTLECVRRVNKIAEDNWKIFTADEFATLQGHLLRLILQWCCLQVWSSALFLSSHKPRRRFATAAARGEAVSVLLISCLPSDFVVENGTLDLLPPGGLLQGQDLDLGRDRGPGLDPDHGQGQGLKVVEDQGPEVVGGAFLQLELSSSRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDSGYRDDRGRYRGGSLRDDYGYRRSPRRSPYRGTREYSPRHSPLYGGRSRRDHSRSPPYSPYGSPDSRYPRGSR 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1719675 1729521 - CmaCh07G004000.1 Cma07g00400 297715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00400 1106 SMART pld_4 701 728 IPR001736 GO:0003824
Cma07g00400 1106 SMART pld_4 356 391 IPR001736 GO:0003824
Cma07g00400 1106 SMART C2_3c 13 150 IPR000008 -
Cma07g00400 1106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 938 1007 IPR000504 GO:0003723
Cma07g00400 1106 Gene3D Endonuclease Chain A 230 465 - -
Cma07g00400 1106 Pfam Phospholipase D Active site motif 356 391 IPR001736 GO:0003824
Cma07g00400 1106 Pfam Phospholipase D Active site motif 702 728 IPR001736 GO:0003824
Cma07g00400 1106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 936 1014 IPR000504 GO:0003723
Cma07g00400 1106 MobiDBLite consensus disorder prediction 1031 1067 - -
Cma07g00400 1106 Pfam Phospholipase D C terminal 777 815 IPR024632 -
Cma07g00400 1106 Gene3D C2 domain 11 182 IPR035892 -
Cma07g00400 1106 SUPERFAMILY RNA-binding domain, RBD 931 1045 IPR035979 GO:0003676
Cma07g00400 1106 Pfam C2 domain 12 153 IPR000008 -
Cma07g00400 1106 PANTHER PHOSPHOLIPASE D DELTA 5 818 - -
Cma07g00400 1106 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 701 728 IPR001736 GO:0003824
Cma07g00400 1106 PANTHER PHOSPHOLIPASE D 5 818 IPR015679 -
Cma07g00400 1106 SUPERFAMILY Phospholipase D/nuclease 204 459 - -
Cma07g00400 1106 Gene3D Endonuclease Chain A 524 753 - -
Cma07g00400 1106 Gene3D - 922 1064 IPR012677 -
Cma07g00400 1106 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 356 391 IPR001736 GO:0003824
Cma07g00400 1106 CDD RRM_RBMX_like 935 1014 - -
Cma07g00400 1106 ProSiteProfiles C2 domain profile. 40 151 IPR000008 -
Cma07g00400 1106 CDD C2_plant_PLD 8 174 - -
Cma07g00400 1106 SMART rrm1_1 937 1010 IPR000504 GO:0003723
Cma07g00400 1106 MobiDBLite consensus disorder prediction 1008 1106 - -
Cma07g00400 1106 SUPERFAMILY Phospholipase D/nuclease 552 781 - -
Cma07g00400 1106 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 175 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00646 Cma-Chr1:3354657 Cma07g00400 Cma-Chr7:1719675 1.73E-32 dispersed
Cma07g00400 Cma-Chr7:1719675 Cma17g00003 Cma-Chr17:12987 0 dispersed
Cma13g00084 Cma-Chr13:640341 Cma07g00400 Cma-Chr7:1719675 6.93E-33 dispersed
Cma03g00650 Cma-Chr3:5502224 Cma07g00400 Cma-Chr7:1719675 4.31E-48 transposed
Cma03g00651 Cma-Chr3:5505034 Cma07g00400 Cma-Chr7:1719675 0 transposed
Cma03g00649 Cma-Chr3:5501095 Cma07g00400 Cma-Chr7:1719675 8.73E-37 wgd
Cma05g00328 Cma-Chr5:1422755 Cma07g00400 Cma-Chr7:1719675 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00400 K01115 - csv:101217251 1516.13