Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00403 ATGTTATCCAGCTTGATGAACCTTCTGAGGGCTTGCTGGTTGCCATCCTCGGACAATATCGTACACAGCAATTCGGATTCGGCAGGCCGTCGTGAAGGCCTACTATGGTACAAAGATCTTGGACATCACATGAATGGTGAATTTTCAATGGCTGTTGTCCAGGCTAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTCCATTGAGCTTGCTCGAATCCGGGCCGTTTGGAACGTTTATTGGTGTCTATGATGGTCATGGTGGACCTGAAGCATCAAATTACATATATGACAATCTTTTCCAGCATTTGAAAAGTAAGAACTCTAAACCAAATGATGTTTTTGAGTATCTGCTGAACATTTCATTTCAAAATGCAGGGTTCACCACAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTTATTTCGTTAGTGGCTAAACAATGGCAGATGAATCCCCAAATTGCAGCTGTTGGTTCATGCTGTCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAATCTTGGAGATTCCCGTGCCGTGCTGGGAAGGCTCGTGCAGGCGACCGAGGAGGTCGTTGCTGTTCAGCTATCAGCCGAGCATAATGTGAGCATAGAAGCTGTCAGAAGGGAGATGCAGGCTTTGCACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGTGTAAAAGGCTTAATGCAGGTTTCCAGATCTATAGGCGATGCCTATCTAAAGAAGGCTGAATTCAACAGGGAGCCCTTGTATACGAAGTTTAGGCTTCGCGAACCATTCAATCGGCCAATATTGAGCTGTGAACCATCAATATCGATGCATGAACTTCGACCACAAGATCAATTCATCATATTTGCCTCTGATGGTCTGTGGGAGCACCTTAGCAATCAGCAGGCTGTGGATATTATTCGAACTCACCCACATCATGGAAGTGCTAAGAGATTGGTAAAAGCTGCTATGCAGGATGCAGCTAAGAAGCGAGAAATGCGATATTCAGATTTGAAGGACATCGACCGAGGTATCCGCCGTCATTTTCACGATGACATCACAGTCATAGTTGTATTTCTCGACTCGAATCTCGTGAGCAGAGCAAGCTCGGTCCGAGGCCCGACTACATCTTTGAGAGGGAGGGGCGTTATCTTACCAAAAAAGTCTCTAGCTCTTTGTGCTCCACCTGCATAA 1242 45.49 MLSSLMNLLRACWLPSSDNIVHSNSDSAGRREGLLWYKDLGHHMNGEFSMAVVQANNLLEDQSQIESGPLSLLESGPFGTFIGVYDGHGGPEASNYIYDNLFQHLKSKNSKPNDVFEYLLNISFQNAGFTTEQQSMSSDVIKKAFQATEEGFISLVAKQWQMNPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVQATEEVVAVQLSAEHNVSIEAVRREMQALHPDDSHIVVLKHNVWRVKGLMQVSRSIGDAYLKKAEFNREPLYTKFRLREPFNRPILSCEPSISMHELRPQDQFIIFASDGLWEHLSNQQAVDIIRTHPHHGSAKRLVKAAMQDAAKKREMRYSDLKDIDRGIRRHFHDDITVIVVFLDSNLVSRASSVRGPTTSLRGRGVILPKKSLALCAPPA 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1743228 1744722 - CmaCh07G004030.1 Cma07g00403 297718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00403 413 SMART PP2C_4 41 374 IPR001932 -
Cma07g00403 413 Pfam Protein phosphatase 2C 81 346 IPR001932 -
Cma07g00403 413 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 405 - -
Cma07g00403 413 Gene3D - 38 386 IPR036457 -
Cma07g00403 413 PANTHER ALPHABET, ISOFORM E-RELATED 6 405 - -
Cma07g00403 413 CDD PP2Cc 48 376 IPR001932 -
Cma07g00403 413 SUPERFAMILY PP2C-like 56 377 IPR036457 -
Cma07g00403 413 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cma07g00403 413 ProSiteProfiles PPM-type phosphatase domain profile. 47 376 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00132 Cma-Chr6:683929 Cma07g00403 Cma-Chr7:1743228 0 dispersed
Cma07g00403 Cma-Chr7:1743228 Cma16g01252 Cma-Chr16:9468656 0 dispersed
Cma20g00405 Cma-Chr20:1941128 Cma07g00403 Cma-Chr7:1743228 1.19E-39 dispersed
Cma03g00656 Cma-Chr3:5525611 Cma07g00403 Cma-Chr7:1743228 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00403 K01102 - csv:101219696 686.411