Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00415 ATGAAAGATGACTATGAGACTGATGAGAAAAAGCAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCTTGTATTGGTAATCAAGTAAGACCATGCGATTTGAGATTTCATTTGATGAAGGAGATCTCTGGAATACCAACGTCATTGAAGAGAGAATCGTCCCAACGAGCAGCATCTCCCGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGACAGCTTTCGAGCACTTTGTCTATTTGCTGTTTGCGAAGAGATGGAAACCTTCACTATTTTACATGACATGTGGAACGCTCCTCCGGGCTTCAGGCCTTCCAAATCCGCCCCTTCTTCTCCGGCGAAGCCTCTTGGCATCTCCAGGCTCCGATCCGAGTCATTCCATGTCACTCACAAGTTGGTGGATAAGGATCCGGATAAGGCGATTCCTCTCTTTTGGGCCGCCATTAATGCAGGGGACAGAGTTGATAGTGCCCTGAAAGATATGGCGATTGTTATGAAACAGCAGAATCGAGCCGAAGAAGCAATCGAAGCGATTAAATCGTTGCGGAGTCGGTGTTCCGATCAGGCTCAGGAATCTCTGGATAATATTCTTCTGGATCTATACAAGAGATGTGGAAGGTTGGATGATCAGATAGCTCTATTGAAGCATAAACTATTGTTGATTCAACAAGGATTAGCGTTCAATGGGAAGAGAACAAAAACAGCCAGATCTCAAGGAAAGAAGTTCCAAGTCTCGGTTGAGCAAGAAGCAACTAGATTACTGGGTAATTTGGGATGGGCATTGATGCAGCACAACAACTACGTTGAAGCAGAAGATGCTTACAGGAAAGCACTCTCAATAGCACCGGATAATAACAAAATGTGCAACCTGGGGATCTGCTTGATGAAACAAGGAAGAATATCAGAGGCTAAAGAGAATCTACGAAGAGTAAAGCCAGCAGTGGCAGATGGGCCAAGAGGAACGGATTCCCATCTCAAAGCTTATGAAAGAGCACAACAGATGCTCCAAGATCTTTCGTCTGAGATGATGAATAGGGGAGGCGACAGGCTCGAACAGAGGCGGCTTTTCGACGCGTTTCTCGGTTCTTCGTCGATTTGGCAGCCTCAGCCTTGCAAGGATCAAGCAACAACAGCCTTGCCAGTCACGAATCCTAGTAGGGTTATTCAAGATGATTTTGGTGATGAGAACATTGATATGAACTTGTTAGCAAACGCCCAGATGGTTCCTCCTCCTCACCAACAATCACAGCAGAAATATATCAAACAAGTTCAAATTCCTTTAGGGAATTCATTGAATATTGCAGCCCAACCATTCTTCTCATCAAAATTTGTTAGTGAACCATCCATCACCAAAGTTCCTCCCATAGGAAACAACCAATTTCCTGAAGGTCTGAAGAGAACAAGGTCTGGAAATGCAGCCAGTTCAATGAGAGTAAGTGACATGGTGGAAATAAAAAGGCCATTTGTAGCTGAAACTAAGACAAGGACATGTCCTCCTACTTCTGAGGAGACAGACAAATTGGCGGCAATGTTGCCTGATGACAATGACTTTGAAGAGGCCATTCTTGCTGCAGTTCTGGGCACAACCAATGAAGTAGAGAAGAAAGCAGGAACCAATGCCAGGGATGTCGGCGGCGGCGGCATAATTCAGAGGAAAATTGAGAAGAGGCTCAAGGTTTTTCAAGACATTACACTTTCCTTGAGTCCCAGAGCCTGA 1746 44.79 MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQRAASPDAMGESSSSGTARLDKVDSFRALCLFAVCEEMETFTILHDMWNAPPGFRPSKSAPSSPAKPLGISRLRSESFHVTHKLVDKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLLLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQHNNYVEAEDAYRKALSIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVADGPRGTDSHLKAYERAQQMLQDLSSEMMNRGGDRLEQRRLFDAFLGSSSIWQPQPCKDQATTALPVTNPSRVIQDDFGDENIDMNLLANAQMVPPPHQQSQQKYIKQVQIPLGNSLNIAAQPFFSSKFVSEPSITKVPPIGNNQFPEGLKRTRSGNAASSMRVSDMVEIKRPFVAETKTRTCPPTSEETDKLAAMLPDDNDFEEAILAAVLGTTNEVEKKAGTNARDVGGGGIIQRKIEKRLKVFQDITLSLSPRA 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1794431 1799538 - CmaCh07G004150.1 Cma07g00415 297730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00415 581 MobiDBLite consensus disorder prediction 51 75 - -
Cma07g00415 581 SUPERFAMILY TPR-like 144 368 IPR011990 GO:0005515
Cma07g00415 581 Pfam Tetratricopeptide repeat 263 294 IPR001440 GO:0005515
Cma07g00415 581 PANTHER PROTEIN POLLENLESS 3-LIKE 2 105 578 - -
Cma07g00415 581 MobiDBLite consensus disorder prediction 464 485 - -
Cma07g00415 581 Coils Coil 174 201 - -
Cma07g00415 581 SMART tpr_5 261 294 IPR019734 GO:0005515
Cma07g00415 581 Gene3D Tetratricopeptide repeat domain 140 356 IPR011990 GO:0005515
Cma07g00415 581 PANTHER PROTEIN POLLENLESS 3-LIKE 2 105 578 IPR044961 -
Cma07g00415 581 ProSiteProfiles TPR repeat profile. 261 294 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00415 - - - cpep:111781871 889.797
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00415 Cma-Chr7:1794431 Cma14g01882 Cma-Chr14:13320542 1.05E-83 dispersed
Cma03g00674 Cma-Chr3:5589638 Cma07g00415 Cma-Chr7:1794431 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1142 . . . Bda10g00191 . . . . . . . Cma07g00415 . Car07g00364 Sed14g1204 . Cpe10g00675 Bhi03g00842 Tan03g2099 Cmetu04g2642 . Hepe04g1607 . . . . . . . . . . . . Cone9ag1616 . . . Cme08g00947 . . . . Bpe10g00163 . . . . . Cmo07g00412 . . . . . . . . . . . . . . . . . . . . . Csa06g03345 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00415 Cma_Chr07 FPKM 16.721649 19.262159 7.124354 5.727472 37.006714 39.964619 36.54047 10.281137 9.62381 10.810352