Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00417 ATGGTACTCGAGGCGACGATGATATGCATTGACAACTCCGAATGGATGCGGAATGGCGATTACGCTCCTTCGAGATTTCAAGCTCAAGCAGATGCCATCAATCTTATTTGTGGAGCCAAGACGCAGTCTAATCCAGAGAATACTGTTGGGGTTCTGACAATGGCGGGAAAAGGTGTTCGTGTACTGGTCACTCCCACCACTGACCTTGGCAAGATACTGGCATGCATGCATGGTTTGGAGATTGGCGGTGAGATTAACTTGGCAGCTAGCATCCAGGTGGCTCAGTTGGCTCTTAAGCATCGTCAGAACAAAAAGCAGCAACAAAGGATTATAGTGTTTGTTGGAAGTCCTGTCAAACATGAAAAAAAGTTACTGGAGATGATAGGAAGGAAGTTGAAGAAGAACAATGTGGCCCTTGATATTGTTGATTTTGGGGAAGAAGATGATGGGAAACCTGAGAAACTGGAAAGTCTTCTGGCAGCTGTGAACAGTAATGACACCAGTCACATTGTTCATGCTCCTGCTGGTCCAAATGTGCTCTCTGACGTACTCATCAGTACACCTATCTTCACTGGAGACGGGGAGGGTGGAAGTGGTTTTGCTGCAGCAGCTGCTGCTGCTGCTGCTGGTGGCGTATCTGGTTTTGATTTTGGAGTTGATCCCAACTTAGATCCGGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCAAGACAAGAGGCAGCTGCTAAGAAGTCTGCAGAGGAGAATGCAAAGCAAGAAAAAGGAGCTGAGCAGCCATCCGGCTCACAGGATGCAACTATGACTGAGCGTCCTGGACATGCAACTTCTGATGCTGAAAACAAGACTGCTGATTTAATGGATGATGAGAATGCGCTGCTAGAACAAGCCCTTGCTATGTCAATGGATACTCCTTCTGCAACCAGTGACACACGAGACATTGACATGTCAGAAGCAGCAGCAGACGATCCTGATTTGGCACTTGCTCTTCAGTTGTCTGTGCAGGAAGCTTCCAGTGATTCGACAAGCGAGACAGATTTGAGCAAACTATTGGCCGATCAGTCTTTTGTGTCTTCTATTTTAGCTTCACTTCCAGGCGTAGATCCAAATGATCCTTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAATCAGAGGATAAGAAAAACGACGACAAAGCATCGAAAGAAGATGAGAAGTGA 1212 46.53 MVLEATMICIDNSEWMRNGDYAPSRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAASIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEMIGRKLKKNNVALDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHAPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKSAEENAKQEKGAEQPSGSQDATMTERPGHATSDAENKTADLMDDENALLEQALAMSMDTPSATSDTRDIDMSEAAADDPDLALALQLSVQEASSDSTSETDLSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSEDKKNDDKASKEDEK 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1803391 1807867 - CmaCh07G004170.1 Cma07g00417 297732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00417 403 MobiDBLite consensus disorder prediction 388 403 - -
Cma07g00417 403 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 324 343 IPR003903 -
Cma07g00417 403 MobiDBLite consensus disorder prediction 259 274 - -
Cma07g00417 403 MobiDBLite consensus disorder prediction 240 258 - -
Cma07g00417 403 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Cma07g00417 403 Pfam Ubiquitin interaction motif 325 340 IPR003903 -
Cma07g00417 403 Pfam Ubiquitin interaction motif 292 306 IPR003903 -
Cma07g00417 403 SMART VWA_4 2 175 IPR002035 -
Cma07g00417 403 MobiDBLite consensus disorder prediction 367 403 - -
Cma07g00417 403 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 403 - -
Cma07g00417 403 SMART uim 292 311 IPR003903 -
Cma07g00417 403 SMART uim 324 343 IPR003903 -
Cma07g00417 403 SMART uim 222 241 IPR003903 -
Cma07g00417 403 SUPERFAMILY vWA-like 4 176 IPR036465 -
Cma07g00417 403 Gene3D - 220 306 - -
Cma07g00417 403 MobiDBLite consensus disorder prediction 240 284 - -
Cma07g00417 403 Coils Coil 232 257 - -
Cma07g00417 403 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Cma07g00417 403 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Cma07g00417 403 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 403 - -
Cma07g00417 403 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Cma07g00417 403 CDD VWA_26S_proteasome_subunit 1 188 - -
Cma07g00417 403 Pfam von Willebrand factor type A domain 6 114 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00417 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - csv:101221273 701.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00118 Cma-Chr6:619785 Cma07g00417 Cma-Chr7:1803391 0 dispersed
Cma07g00417 Cma-Chr7:1803391 Cma16g01241 Cma-Chr16:9376688 0 dispersed
Cma03g00677 Cma-Chr3:5608658 Cma07g00417 Cma-Chr7:1803391 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00417 Cma_Chr07 FPKM 27.02602 26.805313 23.63883 22.065842 25.263708 27.993082 25.228472 36.274963 36.66988 35.842342