Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00422 ATGGTAAAACAGAGCATTTCAATGGAGCTGGTCTGCCATTTCCGACATTCTTGTCTCTTCTTGTCGAGCCTGGTTTTGCTTCTTCTTTTCAAAGAGGTTTCTTGTGCTACATTTATGTTCGTTAACAAGTGCGATTTCACCGTCTGGCCGGGAATTCTCGCCAGCGCCGGCAGCCCCAAACTGGAAACCACGGGTTTCGAGCTGAAAGAAGGAAATTCTCGCTCTTTAGAAGCTCCGACAGGATGGTCCGGTCGGTTTTGGGGCCGTACCGGCTGCGATTTCGACGGCTCCGGCCGTGGCAGCTGCAGCACCGGCGACTGCGACTCTGGTGAGATGGAGTGCAACGGCGCAGGTGCCACGCCGCCGGCCACCTTAGCTGAATTCACGCTCGGCTCCGGTTCTCAGGATTTTTACGACGTCAGCCTCGTTGATGGCTATAATTTGCCGATGATCGTCGAGGGAACTGGCGGGTCAGGCACATGTGCGACGACCGGCTGCATTACAAACGTGAACCAGCTCTGCCCAGTGGAATTGAAGGCTGAAGGCGGCGGCGCGTGCAAAAGCGCTTGTGAGGCATTTGCCACGCCGGAATACTGTTGCAGCGGCGCGTACAACTCCCCAGCGACTTGCCGACCGTCAATATACTCACTAATGTTCAAATCGGCGTGCCCCAGATCGTATAGTTACGCCTATGACGATGCCACAAGCACATTCACTTGTAGAGGAGCTGATTACACCATCACATTTTGCCCTTCTACTCCAAGTCGAAAATCTTCTAGAGATTCGCCACCGATGGTACCAGAACCGACAACAGAGCAGTCAGGGTCAGAACCAGTAACTGGGTCGGGATTGGAATCGGGATCGGACTCAATAGAAGGAGCAACTTTGAGTAATTCTTGGCTTGCAGATATGACTATAGGGAATTCTTCCATAGCTACGAAATCAAGCTTGACATTTCAATCTTTGGCAATTTTGATATCGGTTCTATTGCTTGTTCTCTCGGGATGA 1008 51.88 MVKQSISMELVCHFRHSCLFLSSLVLLLLFKEVSCATFMFVNKCDFTVWPGILASAGSPKLETTGFELKEGNSRSLEAPTGWSGRFWGRTGCDFDGSGRGSCSTGDCDSGEMECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIVEGTGGSGTCATTGCITNVNQLCPVELKAEGGGACKSACEAFATPEYCCSGAYNSPATCRPSIYSLMFKSACPRSYSYAYDDATSTFTCRGADYTITFCPSTPSRKSSRDSPPMVPEPTTEQSGSEPVTGSGLESGSDSIEGATLSNSWLADMTIGNSSIATKSSLTFQSLAILISVLLLVLSG 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1812385 1814188 - CmaCh07G004220.1 Cma07g00422 297737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00422 335 ProSitePatterns Thaumatin family signature. 98 114 IPR017949 -
Cma07g00422 335 PANTHER OS03G0233200 PROTEIN 19 272 IPR001938 -
Cma07g00422 335 PANTHER THAUMATIN-LIKE PROTEIN 1 19 272 - -
Cma07g00422 335 CDD TLP-PA 37 250 - -
Cma07g00422 335 SMART tha2 38 251 IPR001938 -
Cma07g00422 335 Pfam Thaumatin family 42 251 IPR001938 -
Cma07g00422 335 Gene3D Thaumatin 36 251 IPR037176 -
Cma07g00422 335 ProSiteProfiles Thaumatin family profile. 36 251 IPR001938 -
Cma07g00422 335 SUPERFAMILY Osmotin, thaumatin-like protein 36 252 IPR037176 -
Cma07g00422 335 MobiDBLite consensus disorder prediction 253 289 - -
Cma07g00422 335 PRINTS Pathogenesis-related protein signature 37 49 IPR001938 -
Cma07g00422 335 PRINTS Pathogenesis-related protein signature 85 96 IPR001938 -
Cma07g00422 335 PRINTS Pathogenesis-related protein signature 98 127 IPR001938 -
Cma07g00422 335 PRINTS Pathogenesis-related protein signature 136 152 IPR001938 -
Cma07g00422 335 PRINTS Pathogenesis-related protein signature 241 250 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00422 - - - csv:101222295 492.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma07g00422 Cma20g00763 CCT
Cma07g00422 Cma20g00763 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00575 Cma-Chr6:2769173 Cma07g00422 Cma-Chr7:1812385 6.46E-133 dispersed
Cma07g00422 Cma-Chr7:1812385 Cma20g00763 Cma-Chr20:3600503 9.77E-125 dispersed
Cma01g01978 Cma-Chr1:12735370 Cma07g00422 Cma-Chr7:1812385 2.09E-94 wgd
Cma12g00403 Cma-Chr12:2089523 Cma07g00422 Cma-Chr7:1812385 1.73E-117 wgd
Cma03g00680 Cma-Chr3:5628886 Cma07g00422 Cma-Chr7:1812385 8.68E-177 wgd
Cma05g00312 Cma-Chr5:1353680 Cma07g00422 Cma-Chr7:1812385 1.86E-99 wgd
Cma07g00422 Cma-Chr7:1812385 Cma09g00098 Cma-Chr9:437138 1.03E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00422 Cma_Chr07 FPKM 6.638766 8.849186 2.292551 1.775397 24.109436 19.364697 23.17037 0.376234 0.530971 0.556154