Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00427 ATGGAGCAGTGGAAGACTGGAGATTTCTCTCAATCTATTGTTACAGCTGATTTAGTTCCTTCCTCGTCGCTTCCGCCTCAGCCTCTCTCTTTGCCGTCGAGTCGCCACCATAACAACCAACTTCCTGAATCCAGGTTAAGAACAGATGAGGAAGTAAAAGATCCTGTAGCAGTGAGAAAAATTCAGAAGGCAGATCGTGAAAAATTGAGGAGAGACAGGCTGAATGAACATTTTCTTGAGCTCGGAAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTTACAGACACTATTCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAAGCTGACTATGAAGCTCTTTCTGAAGAATCACGTGAGTTAACACAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCTACCATGGATCCTTCGGTGGTCATGGGGCCCCCATATTCATACCCAGTTCCTGTTCCCGTTCCCCCTGGACCAATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAGTCAGAATCCGGGTGCTATTCCTAACCCCTGTTCTACATTTGTCCCGTATACTGCTGCTGCCAACCATCCGATTGAACAGCCCTCTGCCCAATATGCTTCCAATTCACACATCTCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCATCCTAAGCGTAGCAATGTGGAAAGGTGCGACGAATCTAATGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCGTCAACACAACAGGATGCATCCTCTGCAAGTAAGAAAGGTAAGCAGTCACAGAGGAAAGAAAAAAGTGTTACAGATTGTAGTTCTTCAAGTAGATTTTCTTCGTCCCAAGTTCTACAAGATAGCTCCTCTAACAGCGTTGGCGACATTCCGAAACAGAACAACTGA 1005 44.18 MEQWKTGDFSQSIVTADLVPSSSLPPQPLSLPSSRHHNNQLPESRLRTDEEVKDPVAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGSQNPGAIPNPCSTFVPYTAAANHPIEQPSAQYASNSHISSKQDSRSKSSDHPKRSNVERCDESNDVATDLELKMPGSSTQQDASSASKKGKQSQRKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1835142 1838621 + CmaCh07G004270.1 Cma07g00427 297742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00427 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 108 IPR011598 GO:0046983
Cma07g00427 334 MobiDBLite consensus disorder prediction 17 53 - -
Cma07g00427 334 Gene3D - 57 141 IPR036638 GO:0046983
Cma07g00427 334 PANTHER TRANSCRIPTION FACTOR BHLH11 31 333 - -
Cma07g00427 334 MobiDBLite consensus disorder prediction 306 334 - -
Cma07g00427 334 MobiDBLite consensus disorder prediction 276 291 - -
Cma07g00427 334 MobiDBLite consensus disorder prediction 17 39 - -
Cma07g00427 334 MobiDBLite consensus disorder prediction 233 334 - -
Cma07g00427 334 SMART finulus 64 114 IPR011598 GO:0046983
Cma07g00427 334 PANTHER TRANSCRIPTION FACTOR BHLH121 31 333 IPR044579 GO:0003700|GO:0055072
Cma07g00427 334 MobiDBLite consensus disorder prediction 246 271 - -
Cma07g00427 334 CDD bHLH_AtILR3_like 63 137 - -
Cma07g00427 334 Pfam Helix-loop-helix DNA-binding domain 59 108 IPR011598 GO:0046983
Cma07g00427 334 Coils Coil 98 153 - -
Cma07g00427 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 128 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00685 Cma07g00427 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00329 Cma-Chr2:1617043 Cma07g00427 Cma-Chr7:1835142 1.25E-67 dispersed
Cma07g00427 Cma-Chr7:1835142 Cma01g01152 Cma-Chr1:8424445 2.18E-22 dispersed
Cma03g00685 Cma-Chr3:5646124 Cma07g00427 Cma-Chr7:1835142 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35357 PF00010 HLH 6.40E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00427 - - csv:101222613 533.102