Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00430 TCATCACAGTTCCCCTACGGAGGTTTCAGCGGCGGCGCTACAGCGACCATGGACGGAGAACACGGCGGCGAGCGGCTGGTTGTGCAAGGTAGAGCGGAGATTGACACTAGAGCCCCGTTCAAATCCGTTAAAGAGGCCGTCACGTTGTTCGGAGAAAGAATATTGGTGGGGGAAATTTATGCCAAGAAAATGAAGGAAAGGGTGGAAGTGGGAGAATCGCAAGCAAAGCAAAATGAAGAGAACAATCTACTAGCTTTCTGCCTTCAATCTCTCAAAGACGAGCTCGAACGCACCAAGCAAGAACTCGAACAACTCAAATCAACCGAACATGAAAAACCGCACCACGAGCATCCTCTTTCATCAACAATGGCAATCCATCCCGACGTCGACAAAGATCCAAAATTCGTACAGAATAAAAAAGAAAACAACACGAACATGTTGCAGAAAAAGAGAAGTGTAAAATTTGCAGTCCCTCTTGAATTGAACCAAAACATATCTGTGAAATATGAGTCCATGGCCCAAAAGTCATCATTGTCTCCGTCTTCGACTAAGAAGCCGAAGAAAAAAACTTTAGCCTATATTTGGAAGAGGAGGGCTAAATTTTCATCAATGGGAGGGGCTCAATCCGAAAGGGAGGAGAAAGTGTCTCTGGAGCTAACCGAAGAAACGCTTCAGAGTATGGAAGTCGGCATGACATTCAGAGACTATAATGGTAGAATCAGTTCAATGGACTTTCATAGGACTTCAAGCTATCTGGTGACTGCAAGTGATGATGAATCCATCCGACTTTATGATGTTGGTAGTGCAACATGTTTGAAAACAATTAACAGCAAAAAGTATGGGGTTGATCTGGTTTGCTTCACTTCTCATCCTACAACAGTGATTTATTCTTCAAAAAATGGGTGGGATGAATCTCTGCGGCTTCTCTCCTTGAACGACAATAAGTATCTGCGGTACTTTAAAGGACACCACGACAGAGTTGTATCACTCAGCTTATGTGCTCGCAAAGAATGCTTTATATCCGGCTCTCTTGATCAAACTGTTTTGCTTTGGGATCAAAGGGCAGAGAAATGCCAGGGTCTTTTGCGTGTACAAGGAAAGCCAACTACTGCTTACGACGAACAAGGTGTAGTTTTTGCTATTGCCTATGGAGGTTACATAAGGATGTTTGATTCTCGCAAATATGAGAAGGGTCCTTTTGATATATTTTCTGTTGGGGAAGACGTATCTGACACAAATGTTGTAAAGTTCAGCAATGATGGGAGACTCATGTTGTTGACAACTTCTGATGGGCATATTCATGTTCTTGATTCTTTTCGAGGAACACTATTATCCACTTACAATGTAAAACCCATTTCAAGCAATTCAACGTTGGAGGCATCTTTTAGCCCGGAGGGAATGTTTGTGATATCAGGTTCGGGAGATGGCAGTGTTTATGCATGGAGTGTAAGGAGTGGAAAAGAGGTTGCAAGCTGGATGAGTTCTGAAATGGAACCTCCCGTCATAAAGTGGGCTCCGGGAAGTCTAATGTTTGCGACTGGATCTTCTGAACTGTCATTTTGGATACCTGATTTGTCTAAACTGGGAGCATACGTAGACAGAAAGTAG 1608 43.35 SSQFPYGGFSGGATATMDGEHGGERLVVQGRAEIDTRAPFKSVKEAVTLFGERILVGEIYAKKMKERVEVGESQAKQNEENNLLAFCLQSLKDELERTKQELEQLKSTEHEKPHHEHPLSSTMAIHPDVDKDPKFVQNKKENNTNMLQKKRSVKFAVPLELNQNISVKYESMAQKSSLSPSSTKKPKKKTLAYIWKRRAKFSSMGGAQSEREEKVSLELTEETLQSMEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRLYDVGSATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFKGHHDRVVSLSLCARKECFISGSLDQTVLLWDQRAEKCQGLLRVQGKPTTAYDEQGVVFAIAYGGYIRMFDSRKYEKGPFDIFSVGEDVSDTNVVKFSNDGRLMLLTTSDGHIHVLDSFRGTLLSTYNVKPISSNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSSEMEPPVIKWAPGSLMFATGSSELSFWIPDLSKLGAYVDRK 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1872332 1879279 + CmaCh07G004300.1 Cma07g00430 297745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00430 535 Coils Coil 61 81 - -
Cma07g00430 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 274 IPR001680 GO:0005515
Cma07g00430 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 352 IPR001680 GO:0005515
Cma07g00430 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 491 IPR001680 GO:0005515
Cma07g00430 535 SUPERFAMILY WD40 repeat-like 227 521 IPR036322 GO:0005515
Cma07g00430 535 PRINTS G protein beta WD-40 repeat signature 252 266 IPR020472 -
Cma07g00430 535 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Cma07g00430 535 PRINTS G protein beta WD-40 repeat signature 469 483 IPR020472 -
Cma07g00430 535 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 204 534 - -
Cma07g00430 535 MobiDBLite consensus disorder prediction 106 126 - -
Cma07g00430 535 PANTHER WD40 REPEAT PROTEIN SWD2 204 534 IPR037867 GO:0048188
Cma07g00430 535 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Cma07g00430 535 Pfam WD domain, G-beta repeat 461 481 IPR001680 GO:0005515
Cma07g00430 535 Pfam WD domain, G-beta repeat 238 265 IPR001680 GO:0005515
Cma07g00430 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 266 - -
Cma07g00430 535 MobiDBLite consensus disorder prediction 1 21 - -
Cma07g00430 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 352 - -
Cma07g00430 535 Coils Coil 85 112 - -
Cma07g00430 535 SMART WD40_4 313 352 IPR001680 GO:0005515
Cma07g00430 535 SMART WD40_4 226 265 IPR001680 GO:0005515
Cma07g00430 535 SMART WD40_4 396 437 IPR001680 GO:0005515
Cma07g00430 535 SMART WD40_4 440 482 IPR001680 GO:0005515
Cma07g00430 535 Gene3D - 218 522 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00430 K14962 WDR82, SWD2, CPS35; COMPASS component SWD2 - csv:101202819 646.351
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00688 Cma07g00430 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00430 Cma-Chr7:1872332 Cma14g00666 Cma-Chr14:3345859 6.25E-115 dispersed
Cma01g01970 Cma-Chr1:12704293 Cma07g00430 Cma-Chr7:1872332 1.99E-14 wgd
Cma03g00688 Cma-Chr3:5687985 Cma07g00430 Cma-Chr7:1872332 8.34E-55 wgd
Cma05g00303 Cma-Chr5:1311385 Cma07g00430 Cma-Chr7:1872332 7.64E-06 wgd
Cma07g00430 Cma-Chr7:1872332 Cma09g00106 Cma-Chr9:468990 9.68E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1107 . . Bda04g00022 . . . . . . . Cma03g00688 Cma07g00430 Car03g00634 Car07g00378 Sed14g1189 Cpe19g00857 Cpe10g00661 Bhi03g00871 Tan03g2068 Cmetu04g0034 . Hepe04g1588 . . Cla01g01977 Cam01g2071 Cec04g1730 Cco04g1795 Clacu01g2092 Cmu01g1968 Cre04g1643 . . . . Lsi01g00605 . . Cme08g00924 Blo05g00828 . . . . Bpe06g00022 . . . Cmo03g00714 Cmo07g00428 . . . . . . . . . . . . . . . . . . . . . Csa06g03322 Chy02g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008578 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00430 Cma_Chr07 FPKM 3.90467 4.905717 3.976887 4.370899 4.250156 4.46413 4.822898 3.94494 3.620245 3.884035