Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00432 ATGGATGGAGTGAAAGAGGGGATAGAAAGAAAAGCAGCGTCACAAGTAGCAGTAATGGGCGAAGGAAAAGAAGGCGATTGGGAGTGTAGTGGATGCAAGAACAGGAACTATGCTTTCCGATCGTTCTGTAACAGATGCAAACAACCTCGCCTTCTCGTCGACAATAAAACCCCTCCAGACTCCAAATGGCTTCCTCGCATCGGCGACTGGATCTGCACGGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAAAAGTGTGGCCAACCAAAGGAGATAGCAGCAATGCCAGCAATTGCAATCCATGGAGCTTCTTTTCCAACTTATTCACACTATTTTGCCAGGACCCAAGGTGGATTGGATACAAAGATGAATCTTGGATTAAGAAATGGCCCTTTACAGCAACTGCATCCTCTGAGCTCCAATTGGTCCCTGGGAGGTGCTGATAAGTATGAAATTCATGCAGCTCCGGCATTTCCTTTGGGTGGAAATAATTCTGCAATCTCGTATATGAGTTCCCCTAATCAGATCCTTTCAGTTCCGAAGGGTTGGCGAAATGGTGACTGGATATGCAACTGTGGCTTCCATAATTACTCTTCTCGTGCACAGTGCAAAAAATGCAATGCTTCACCACAAGCACTTGGAATGAAACGCTTAGCATCCGAAGAACTCGTTCATCAATGGGATAACAAGAGACTAAATATTGGACAGACAAATGAGCAACAACTGTCTTTCCCAGGGTTTGAGCAGATGGTTGGTTCCAGTAGTGACCCAAATGTGGGACTATTATATAACTCTTATCCCCACGAAAGTTCTGGTATAGCTCCGAGTTTGGAAATGCCAATGCAGTTCCCCCAACAAGCAACTGCACCAACGCTCCTTGGGAAAGGAGCAAAACAGTGGCGCAACGGAGATTGGATGTGCACAAATTGTAATAATCATAATTATGCGTCTCGCTTGCAATGTAACAGCCCCATCGCTTCGCTTGAGTTCTCCGGTTCTGCTCTGACCGATTTCTTGCTTCTTGAACAACACCTTCACAGCCACCATTTCCCTCGCTCACAATTGATTGCCCGCCACTTGCCGATGGCGATTAGTCATCAGCACCTCAAATTGGAAGACCCTTTTCTTCAAAATTACAAGCCCTCAGAGCTACGGATCGCTTCTGAGTTTCTCACCACTTGGCTTCCCTTTCTTTCCAGAGATCTTTGTCAAGATTGCACGCAATTGCTCTCGGATCGAATCCGCGCCCTTGATCCAGCATTACGGCATTGGGACTTCCTGATTTGTTATGTTGCTAAAAAGAGTGAGGCGTCTACTGTAGTTTACATTATATGTTCCTATGCTGTCCGTCCCGACGAGGACTCGAGTTCTGCATCTCCCCCAAGAGAGAAAGACATGAATGAGAGTAATGGAAATGAGGTTGATGCTTGTGATGCAAATTCTCTTGGAAGTTGGAAAGATGAAGCGGAAACAAATTCATTAGGGAGTTGGCAGGATGGCATAAATGAAGGGAATGAAGCTGATGGATTACCTGAAACTTCTTCTAGTGAGCCATCCTCTAAATTAAATTCCACCAAGACATCAGGGCCTCGATTGTCGTGGGCCGACATGACTCAGGAGGATGAACTAGAAGAAGAGGAAGATGAATGCGAAACAGAAAAAAGAATAGTCAATGCGAACGCCGGGAAATTAACAATATCGAAGGTTATTGAGAAGCCTAAGCTATCTAGAGAGCAAAGAGAGTACATCAGGTTCATGAGTGTTGGACGAAAGAAAGATTTTATTTGTTTGGAGAGGTTTAAAGGAAAATTTGTAAACATTCTTGAAGGACTTGAGCTTCATACAGGCATTTTTAGCGCTGCAGAACAGAAGAGAATAGTTGATCATGTTTATGCACTACAGGAGATGGGCATGAAGGGAGAATTAAAAGAACGAACATTTTCCGCTCCCAAAAAATGGATGAAGGGAAAGGGACGTGTAACTCTGCAGTTTGGGTGCTGTTACAATTATGCAGCTGATAAAAATGGCAACCCTCCTGGAATTCTTCAAAGTGAAATTGTGGATTCAATTCCTTCTCTCTTTAAGGTGATCATTAGAAGGTTGGTGAGATGGCATGTGATTCCTCCAACATGTGTTCCTGATAGTTGCATTGTGAACATCTATGATGAAGAGGACTGTATTCCTCCCCATATTGACAACCATGATTTTGTTCGACCGTTTTGCACCGTGTCATTCCTCAGTGAATGCAATATTGTTTTTGGAACAAACCTTTCTATCGTAGGTCCTGGTCAATTTTCTGGGCCGATTGCAATCCCCCTGCCTGTCGGGTCTGTTCTTGTGTTGAATGGAAATAGTGCCGATGTTGCTAGACATTGTGTACCTGCAGTCCCTACAAAGAGGATATCAATTACATTTAGGAGAATAGATGAGTCCAAAAGGCCAATTGAGTATGCTCCAGAACCAGATTTGCAGGGAATCCAACCCTTGCCCTACGAAGCAAGTAAAAATGATGTACCAACTTCTCATGTATCATCAGAAAGGGAAATAAGGAGGCAGCCATTTAGGCGCGGTGGTGGTCATATGAGAACCAGGGGATCTGGAAACAGAAGCGACACTCAATTTGAGCCACGGAATCCAGGTAGGGCTTGGCATACGTCGTCGGATAGGAGGAGCAGAGTAAATCTAGAAGACAGCTGA 2706 44.42 MDGVKEGIERKAASQVAVMGEGKEGDWECSGCKNRNYAFRSFCNRCKQPRLLVDNKTPPDSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEIAAMPAIAIHGASFPTYSHYFARTQGGLDTKMNLGLRNGPLQQLHPLSSNWSLGGADKYEIHAAPAFPLGGNNSAISYMSSPNQILSVPKGWRNGDWICNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHQWDNKRLNIGQTNEQQLSFPGFEQMVGSSSDPNVGLLYNSYPHESSGIAPSLEMPMQFPQQATAPTLLGKGAKQWRNGDWMCTNCNNHNYASRLQCNSPIASLEFSGSALTDFLLLEQHLHSHHFPRSQLIARHLPMAISHQHLKLEDPFLQNYKPSELRIASEFLTTWLPFLSRDLCQDCTQLLSDRIRALDPALRHWDFLICYVAKKSEASTVVYIICSYAVRPDEDSSSASPPREKDMNESNGNEVDACDANSLGSWKDEAETNSLGSWQDGINEGNEADGLPETSSSEPSSKLNSTKTSGPRLSWADMTQEDELEEEEDECETEKRIVNANAGKLTISKVIEKPKLSREQREYIRFMSVGRKKDFICLERFKGKFVNILEGLELHTGIFSAAEQKRIVDHVYALQEMGMKGELKERTFSAPKKWMKGKGRVTLQFGCCYNYAADKNGNPPGILQSEIVDSIPSLFKVIIRRLVRWHVIPPTCVPDSCIVNIYDEEDCIPPHIDNHDFVRPFCTVSFLSECNIVFGTNLSIVGPGQFSGPIAIPLPVGSVLVLNGNSADVARHCVPAVPTKRISITFRRIDESKRPIEYAPEPDLQGIQPLPYEASKNDVPTSHVSSEREIRRQPFRRGGGHMRTRGSGNRSDTQFEPRNPGRAWHTSSDRRSRVNLEDS 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1886274 1895382 - CmaCh07G004320.1 Cma07g00432 297747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00432 901 ProSitePatterns Zinc finger RanBP2-type signature. 70 89 IPR001876 -
Cma07g00432 901 SUPERFAMILY Ran binding protein zinc finger-like 60 94 IPR036443 -
Cma07g00432 901 SMART zf_4 189 212 IPR001876 -
Cma07g00432 901 SMART zf_4 68 92 IPR001876 -
Cma07g00432 901 SMART zf_4 306 330 IPR001876 -
Cma07g00432 901 SMART zf_4 25 49 IPR001876 -
Cma07g00432 901 Pfam 2OG-Fe(II) oxygenase superfamily 615 809 IPR027450 -
Cma07g00432 901 SUPERFAMILY Ran binding protein zinc finger-like 185 211 IPR036443 -
Cma07g00432 901 SUPERFAMILY Ran binding protein zinc finger-like 23 51 IPR036443 -
Cma07g00432 901 Pfam Zn-finger in Ran binding protein and others 66 94 IPR001876 -
Cma07g00432 901 Pfam Zn-finger in Ran binding protein and others 23 50 IPR001876 -
Cma07g00432 901 Pfam Zn-finger in Ran binding protein and others 304 326 IPR001876 -
Cma07g00432 901 Gene3D - 598 819 IPR037151 -
Cma07g00432 901 MobiDBLite consensus disorder prediction 844 858 - -
Cma07g00432 901 SUPERFAMILY Ran binding protein zinc finger-like 298 325 IPR036443 -
Cma07g00432 901 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 369 893 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cma07g00432 901 SUPERFAMILY Clavaminate synthase-like 610 811 - -
Cma07g00432 901 ProSiteProfiles Zinc finger RanBP2 type profile. 23 52 IPR001876 -
Cma07g00432 901 Coils Coil 543 563 - -
Cma07g00432 901 MobiDBLite consensus disorder prediction 885 901 - -
Cma07g00432 901 MobiDBLite consensus disorder prediction 511 537 - -
Cma07g00432 901 MobiDBLite consensus disorder prediction 454 482 - -
Cma07g00432 901 PANTHER RNA DEMETHYLASE ALKBH9B 369 893 - -
Cma07g00432 901 MobiDBLite consensus disorder prediction 459 474 - -
Cma07g00432 901 ProSiteProfiles Zinc finger RanBP2 type profile. 66 95 IPR001876 -
Cma07g00432 901 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 715 812 IPR005123 -
Cma07g00432 901 ProSitePatterns Zinc finger RanBP2-type signature. 27 46 IPR001876 -
Cma07g00432 901 Gene3D - 20 51 - -
Cma07g00432 901 Gene3D - 61 95 - -
Cma07g00432 901 Gene3D - 183 214 - -
Cma07g00432 901 Gene3D - 299 327 - -
Cma07g00432 901 MobiDBLite consensus disorder prediction 817 901 - -
Cma07g00432 901 MobiDBLite consensus disorder prediction 497 556 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00432 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 841.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00432 Cma-Chr7:1886274 Cma17g01156 Cma-Chr17:8027513 1.10E-30 dispersed
Cma03g00691 Cma-Chr3:5697859 Cma07g00432 Cma-Chr7:1886274 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1104 . . . Bda10g00180 . . . Bma15g00948 . . . Cma07g00432 . Car07g00381 Sed14g1183 Cpe19g00853 . Bhi03g00876 Tan03g2064 Cmetu04g2634 . Hepe04g1584 . . Cla01g01972 Cam01g2064 Cec04g1723 Cco04g1789 Clacu01g2085 Cmu01g1962 Cre04g1636 Cone8ag0845 . . . Lsi01g00609 . . Cme08g00918 . . . . . . . . . . Cmo07g00431 . . . . . . . . . . . . . . . . . . . . . Csa06g03316 Chy02g00582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010373 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00432 Cma_Chr07 FPKM 12.07716 11.982425 14.614286 13.930923 16.74382 16.217979 16.948532 15.934199 15.395679 15.562001