Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00441 ATGAGGCTTCTTCTTGTGTTGTTCTTTGGGCTCCTGTTGTTTTCCGGTGGTTTCTCTTCCTCCGCCGCCGACATCAGGGCGGAGATACAGGCATTGATGTCGTTTAAACTTAACCTTCATGACCCTCTTGGTGCATTGACTGGGTGGGATTCTTCAACCCCTTTGGCGCCTTGTGACTGGAGAGGCGTTTTATGTGTCAATAATCGTGTCACTGATCTTCGATTGCCTCGTCTTCAACTTTCCGGCCGATTGACCGATCAGTTGGCTAACTTGCCGATGCTCCGGAAGTTGAGTATTCGATCTAATTTCTTCAATGGTACCATTCCCTCTTCTTTGTCCAAATGTGCGTTTCTACGTTCGATTTTCTTACAGTACAACTCGTTTTCCGGTGACCTTCCGGTGGAGTTTGGGAACTTAACCAATCTCCATATTCTCAACGTGGCGGCGAATCGCCTCTCCGGTGGAATTCCCTACGACCTTCCGAGCAGTCTAAAGTATCTCGATCTTTCGTCGAATGCATTCTCCGGTCAGATTCCGAGGAGCGTTGTGAACATGACGGAGCTTCAGGTTGTGAATCTCTCTTTCAATAGATTTGGCGGCGAGATTCCGGCGAGCTTTGGTGAGCTGCAGAAGCTTAAACATCTTTGGTTGGATCATAATGTTCTAGAAGGGACATTGCCTTCGGCTCTTGCGAATTGTTCTTCGCTTGTTCATTTGAGCGTTGAGGGAAATGCCCTTCAAGGCATAATCCCGACAGCCATCGGAGCTCTTCCGAATCTTCAAGCTATTTCGCTCTCGCAAAATAGTCTCACTGGTTCAGTTCCTTACTCTCTGTTTTGCAATGTGTCGTCGCATGCGCCGTCTCTTCGAATCGTTCAACTTGGATTTAATGCGTTCACGGACATTGTCAAACCTCCGACAGCGACATGTTTTAGTGTTCTACAGGTCCTTGATATCCAACATAATCAGATAAAGGGGGAATTCCCCTTGTGGTTAATGGGTATTCCGACATTGACAGTCTTGGATTTTTCTGTCAATAATCTCTCCGGCGAGATTCCTCCCGGAATTGGGAATCTCTCGGGATTACAAGAGCTTAAAATGGCTAACAATTCGTTCCACGGCGCGATTCCGTCCGAAATCAAGAACTGTACTTCGATTTCTGTTATTGATTTTGAAGGAAATCGTTTAACCGGAGAGATTCCGCCGTTTTTGGGTTACATGAGAGGTTTGAAACGATTATCTCTCGGAGGGAATAATTTCTCCGGTTACGTTCCGGCCAGTTTGGGAAATCTTTTGGAGCTTGAAACCTTGAATTTAGCTGATAATGGCTTGAGTGGAACCCTTCCTCTTGAACAGCTAATGGGTCTTGGGAATTTAATGGCGATGGAGCTCGGCGGGAACGAATTTTCCGGCGAGGTTCCGATTGGTATTGGGAATCTCAGCCGTCTTGAGATTTTGAATCTCAGTGCTAATAGTTTTTTTGGGAAGATTCCGTCTAGTCTTGGCAGTCTCTTCAAGCTAACCACCTTGGATTTGAGCAAACAGAATCTCTCCGGCGAGCTGCCGTTTGAGCTCTCTGGTTTGCCTAATTTACAGGTGATTGCTCTACAAGAGAACAAGCTATCTGGGAAAATTCCTGATGGATTCAGTAGTTTAGTGGGCTTGCGCTATTTAAATCTAAGCGCTAATGGATTTTCCGGCGAAATCCCTTCAAATTATGGATTTCTCCGATCACTTGTTTCACTGTCGTTGTCGAAAAATCACATTTCTGGGTCGATCCCTTCAGAGCTGGGGAACTGCTCTGTTCTAGAACATTTGGAGGTCCGTTCAAATGCTCTTTCCGGCGATATTCCGGCGGATATTTCTCGTTTATCTCATCTACAAGAGCTCGATTTGGGTGGAAATAATTTAACTGGCGAAATCCCTGAAGAGATCTCTCGTTGCTCGTCTTTAAAATCGCTCCTTCTCGACTCGAATCGTCTCTCCGGTAGCATACCGGAGTCGTTATCGGAGCTCTTGAACTTAACCGAGCTCGACCTCTCATCCAACAATTTGAGTGGCGTTATTCCTCTTAATCTTAGCTCAATTACTGGATTAGTGAGGTTAAACGTCTCGAGTAATGATCTAGAAGGCGAAATCCCAGCTTCTTTAGGCTCTAGATTCAATAACTCAGCTGTGTTTGCTAATAATTCCAAGCTATGTGGGAAACCATTGGCTTGGAATTGTAAGGATACAAAGAAAAAGGATAGAACAAAGAGATTGATATTATTCATAGCAGTGGCCGCCAGTGGAGCTTGTCTTTTGGCTTTGTGTTGCTGCTTTTACATTTTCAGCTTGTTGCGATGGCGGAAGAGGCTCAAAGAGAGGGCGTCCGGCGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCAGCGGCAAGTGGCGGCCGTGGAAGCACAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATCACTCTAGCCGAAACAATTGAAGCAACAAGGCATTTCGATGAAGAAAATGTTCTAAGCAGGACACGTTATGGGTTAGTTTTCAAAGCTTGTTACAACGACGGCATGGTTCTTTCAATCCGCCGCCTATCAAATGGTTCATTGGACGAAAACATGTTCAGAAAAGAAGCTGAATCATTGGGGAAAGTCAGGCACCGGAATTTGACTGTTCTTCGTGGCTACTACGCTGGCCCTCCTGACATGCGGCTCTTAGTATACGATTACATGCCTAATGGCAACCTCGCCACTCTGCTTCAGGAAGCATCGCACCAAGATGGGCATGTTTTGAATTGGCCAATGCGGCATCTCATTGCTTTAGGCATCGCCCGTGGCTTAGCCTTTCTCCATTCCTCATCCATTATACATGGAGATGTTAAGCCACAAAGTGTTCTTTTCGACGCCGATTTCGAAGCTCATTTGTCAGATTTCGGGCTCGATCGACTAACCATTGCTGCTGCTGAAGCTTCCACATCTAGCTTGGTGGGCACTTTGGGGTACATTGCACCAGAAGCTGTGTTGACAGGGGAGGCCACGAAGGAATCGGATGTCTATAGCTTTGGCATTGTGTTGCTTGAGATTCTAACGGGGAAGAAGCCAGTGATGTTCACGGATGATGAAGACATTGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATTACTGAGCTTTTAGAGCCTGGTTTGCTCGAGCTGGATCCTGAATCCTCTGAATGGGAAGAGTTTTTGCTTGGTGTGAAAGTTGGATTACTTTGCACTGCACCCGATCCCCGCGATCGACCAGCCATGTCGGATATCGTTTTCATGCTCGAAGGATGTCGTGTCGGACCAGACATCCCTTCCTCTGCTGATCCCACCTCCCAACCGTCACCGGCGTAA 3393 46.48 MRLLLVLFFGLLLFSGGFSSSAADIRAEIQALMSFKLNLHDPLGALTGWDSSTPLAPCDWRGVLCVNNRVTDLRLPRLQLSGRLTDQLANLPMLRKLSIRSNFFNGTIPSSLSKCAFLRSIFLQYNSFSGDLPVEFGNLTNLHILNVAANRLSGGIPYDLPSSLKYLDLSSNAFSGQIPRSVVNMTELQVVNLSFNRFGGEIPASFGELQKLKHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGIIPTAIGALPNLQAISLSQNSLTGSVPYSLFCNVSSHAPSLRIVQLGFNAFTDIVKPPTATCFSVLQVLDIQHNQIKGEFPLWLMGIPTLTVLDFSVNNLSGEIPPGIGNLSGLQELKMANNSFHGAIPSEIKNCTSISVIDFEGNRLTGEIPPFLGYMRGLKRLSLGGNNFSGYVPASLGNLLELETLNLADNGLSGTLPLEQLMGLGNLMAMELGGNEFSGEVPIGIGNLSRLEILNLSANSFFGKIPSSLGSLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGKIPDGFSSLVGLRYLNLSANGFSGEIPSNYGFLRSLVSLSLSKNHISGSIPSELGNCSVLEHLEVRSNALSGDIPADISRLSHLQELDLGGNNLTGEIPEEISRCSSLKSLLLDSNRLSGSIPESLSELLNLTELDLSSNNLSGVIPLNLSSITGLVRLNVSSNDLEGEIPASLGSRFNNSAVFANNSKLCGKPLAWNCKDTKKKDRTKRLILFIAVAASGACLLALCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSTENGGPKLVMFNNKITLAETIEATRHFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTIAAAEASTSSLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTDDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPAMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1934435 1937827 - CmaCh07G004410.1 Cma07g00441 297756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00441 1130 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Cma07g00441 1130 Gene3D Ribonuclease Inhibitor 159 305 IPR032675 -
Cma07g00441 1130 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 667 1126 - -
Cma07g00441 1130 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 603 672 - -
Cma07g00441 1130 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 9 607 - -
Cma07g00441 1130 SUPERFAMILY L domain-like 536 737 - -
Cma07g00441 1130 Pfam Protein kinase domain 848 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00441 1130 MobiDBLite consensus disorder prediction 791 818 - -
Cma07g00441 1130 ProSiteProfiles Protein kinase domain profile. 838 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00441 1130 Pfam Leucine Rich Repeat 482 504 IPR001611 GO:0005515
Cma07g00441 1130 Gene3D Transferase(Phosphotransferase) domain 1 914 1116 - -
Cma07g00441 1130 SUPERFAMILY Protein kinase-like (PK-like) 819 1118 IPR011009 -
Cma07g00441 1130 SMART LRR_typ_2 335 359 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 139 163 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 185 208 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 431 455 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 257 281 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 407 430 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 528 551 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 480 504 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 672 696 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 91 115 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 576 600 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 624 648 IPR003591 -
Cma07g00441 1130 SMART LRR_typ_2 209 232 IPR003591 -
Cma07g00441 1130 Pfam Leucine rich repeat 650 709 IPR001611 GO:0005515
Cma07g00441 1130 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Cma07g00441 1130 Pfam Leucine rich repeat 577 637 IPR001611 GO:0005515
Cma07g00441 1130 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515
Cma07g00441 1130 Gene3D Ribonuclease Inhibitor 386 453 IPR032675 -
Cma07g00441 1130 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Cma07g00441 1130 ProSiteProfiles Leucine-rich repeat profile. 674 695 IPR001611 GO:0005515
Cma07g00441 1130 MobiDBLite consensus disorder prediction 796 810 - -
Cma07g00441 1130 SMART LRR_sd22_2 624 647 - -
Cma07g00441 1130 SMART LRR_sd22_2 257 284 - -
Cma07g00441 1130 SMART LRR_sd22_2 672 693 - -
Cma07g00441 1130 SMART LRR_sd22_2 139 169 - -
Cma07g00441 1130 SMART LRR_sd22_2 576 608 - -
Cma07g00441 1130 SMART LRR_sd22_2 209 235 - -
Cma07g00441 1130 Gene3D Ribonuclease Inhibitor 454 751 IPR032675 -
Cma07g00441 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 603 672 - -
Cma07g00441 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 607 - -
Cma07g00441 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 667 1126 - -
Cma07g00441 1130 Gene3D Ribonuclease Inhibitor 306 385 IPR032675 -
Cma07g00441 1130 SUPERFAMILY L domain-like 27 302 - -
Cma07g00441 1130 SUPERFAMILY RNI-like 250 600 - -
Cma07g00441 1130 Gene3D Phosphorylase Kinase; domain 1 811 913 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00441 Cma-Chr7:1934435 Cma17g00119 Cma-Chr17:598950 6.48E-169 dispersed
Cma16g00645 Cma-Chr16:3354250 Cma07g00441 Cma-Chr7:1934435 3.12E-20 dispersed
Cma03g00702 Cma-Chr3:5732636 Cma07g00441 Cma-Chr7:1934435 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68685 PF00069 Pkinase 2.40E-34 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00441 - - csv:101203208 1889.0