Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00442 ATGAGGATACTTTGTGATTCCTGTGAAAATGCTGCAGCGACCTTGTTTTGTGCAGCTGATGAGGCTGCTCTTTGTGCAGCATGTGATGTCAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAGTCCGAGTGAAGTTTCCCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGAAGCTCCTTGTGCTTACAATGCGACGTGGTTGTTCATGTGGGAGGCAAGAGAATGCACAAGAGATATCTTCGGCTGGGGCAGAGAGTTGAGTTTCCTGGGGATAAACAAAATGATCCAAAGGACATGAATGTACAAGCGATGGAACAGGCTGAGACAGTGAGAGGTCAGAATCAAGATGGGGTTGATTCAAATGGAGATGGGCATTCCAAGCGGGGGAACCAAGTGATTGATTTGAACATGTAG 459 47.06 MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDMNVQAMEQAETVRGQNQDGVDSNGDGHSKRGNQVIDLNM 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1941184 1942658 + CmaCh07G004420.1 Cma07g00442 297757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00442 152 CDD Bbox1_BBX-like 56 95 - -
Cma07g00442 152 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Cma07g00442 152 MobiDBLite consensus disorder prediction 123 152 - -
Cma07g00442 152 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 135 - -
Cma07g00442 152 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma07g00442 152 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cma07g00442 152 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Cma07g00442 152 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Cma07g00442 152 Gene3D Classic Zinc Finger 1 93 - -
Cma07g00442 152 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma07g00442 152 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 135 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00703 Cma07g00442 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00746 Cma-Chr4:3799634 Cma07g00442 Cma-Chr7:1941184 1.07E-28 dispersed
Cma07g00442 Cma-Chr7:1941184 Cma16g00606 Cma-Chr16:3132335 7.92E-69 dispersed
Cma03g00703 Cma-Chr3:5739510 Cma07g00442 Cma-Chr7:1941184 8.50E-79 wgd
Cma05g00283 Cma-Chr5:1210628 Cma07g00442 Cma-Chr7:1941184 3.31E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35361 PF00643 zf-B_box 1.30E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00442 - - cpep:111781183 287.73