Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00448 ATGGAATTCTCTCTCCGCTTCTTCTTCCTCTTCCTAGCTTCATCTCTCTTCCTTCCTCCCTCTGATTCATGCCACCCCACCGACAAAGAAGCCCTTCTCCACTTCAAACTCAAAATCACCTCCGACCCTTCTCACCTCCTCCTTTCATGGAACTCCGCCACCGACTGCTGCTTCTCCTGGGACGGCGTCGCCTGCGATTCCTCCGGCAGAGTCACCAACCTCACCCGCCCCGGGATTGTCTCCGGCATCGACTTCATCGCCGACACTTACATGTCTGGATCTCTCTCCCCTTTTCTTGGAAACTTGTCGTCTCTTCAATTTCTCGACCTCAGCAATCTCAAAGACGTTAGCGGTCGAATTCCTTTCGAGTTTGGTAAGCTATCACGACTGACCCATTTGTTCCTCGATTCAAATAAGCTCATGGGTTCGATTCCTAGAAGCTTTGGGTGTCTTTTTCGATTGGAAAAACTTTATCTTGGCAATAATCGGCTCTCTGGAATCATCCCTCCTCCGATCTTTGAGCATTTTAAGTGCCTTTCTGAATTGGGTCTGTCCGGAAATAGGCTATCTGGGCCGATTCCTAGCTCAATTGGGAAGCTAATTCAGCTCAAAAATCTCGATTTTCATGCCAACAATTTCTCTGGAAGCATTCCTAGGAGTATTGGGAAGCTTACAAATCTCAGATATCTCGATTTCTCAGAAAATGAGCTAACAGGGAGGATTCCGACATCCATCGGTGGACTGTCGGAGTTGGTTTTGCTGTACCTTAATCAGAACAAGATTACCGGGAGCATTCCCTCTTCCGTGTCCGGACTTAGTTCTCTGATATTCTGCCGGCTGTCGGAAAACCAGCTGAGTGGTCGGTTACCGGCGTCTGTCGGTAAGCTTGCAAAGATCCAACGGCTGATTCTTGAGAACAACAAGCTTTCTGGGAAATTGCCGTCGTCTATTGGCCGTTTAACCACTTTAACTGATTTGTTCTTCGCTAACAATCGTTTTACCGGCAAGATTCCCAAGACTTTTGGAAATTTGGAAAACCTCCAAACTCTGGATTTGTCGAGGAATTCGCTTTCCGGTGGAATTCCTCATCAGTTATCAAAATTACAGAGATTACAGAGCTTGGATCTTTCGTTTAATCCACTTGGGTTGCGATCGATTCCGAATTGGTTTGTAAAAATGAAGCTTTTTAGGCTACTTTTGGCCAAAACTGGGATTGAAGGGGCGTTTCCCAAATGGTTGTCTTCATCTTCTATATCAGTTCTTGATTTGTCGGCCAATCGATTAACAGGGCCGTTGCCCCATTGGATTGGGAACATGACGAATCTTTCATTCCTTAACCTGTCGAAGAACGGATTTCATTCGACAATTCCAGCTGAATTCAAGAACCTTTTACTGTTAATGGATCTTGATCTTCATTCCAATCACTTCACAGGGTGCCTTGACAACATATTTTCAAAAGGAGTTCAAGACCCACTTGGCCATTTCAATTCAATTGATGTTTCTCGCAATCATTTCAGTGGTTGTATTGATGAGAATGTTGGAAACAGAGCAGCAATGTCTTCGATCAAGTCACTTGTTTTATCCGACAATGAATTAGAAGGGGAAATTCCCAAGTCGTTGTCGGAACTTAGTGAGTTACATGTACTGGACGCAGCTAGAAACAAGCTTTCCGGTGAAATTCCGGCAGAGCTTGGAAATGCGACGGAATTGACCACGATTTTGCTTTCGAAGAACAAGCTGTGTGGGCGGATTCCAGCAGAGGTGTTGAATTTGCAGAAGCTTTGGAAGTTCGACGTGTCGGAAAACAGACTTTGTGGCGAAATTCCGCCGCATAAAACCCATTTCCCGGCATCTGTGTTCAAGCATAACCGTGGACTCTGTGGAGCTCCTCTTCCTCCCTGCAAGTATTCTTAG 1914 45.61 MEFSLRFFFLFLASSLFLPPSDSCHPTDKEALLHFKLKITSDPSHLLLSWNSATDCCFSWDGVACDSSGRVTNLTRPGIVSGIDFIADTYMSGSLSPFLGNLSSLQFLDLSNLKDVSGRIPFEFGKLSRLTHLFLDSNKLMGSIPRSFGCLFRLEKLYLGNNRLSGIIPPPIFEHFKCLSELGLSGNRLSGPIPSSIGKLIQLKNLDFHANNFSGSIPRSIGKLTNLRYLDFSENELTGRIPTSIGGLSELVLLYLNQNKITGSIPSSVSGLSSLIFCRLSENQLSGRLPASVGKLAKIQRLILENNKLSGKLPSSIGRLTTLTDLFFANNRFTGKIPKTFGNLENLQTLDLSRNSLSGGIPHQLSKLQRLQSLDLSFNPLGLRSIPNWFVKMKLFRLLLAKTGIEGAFPKWLSSSSISVLDLSANRLTGPLPHWIGNMTNLSFLNLSKNGFHSTIPAEFKNLLLLMDLDLHSNHFTGCLDNIFSKGVQDPLGHFNSIDVSRNHFSGCIDENVGNRAAMSSIKSLVLSDNELEGEIPKSLSELSELHVLDAARNKLSGEIPAELGNATELTTILLSKNKLCGRIPAEVLNLQKLWKFDVSENRLCGEIPPHKTHFPASVFKHNRGLCGAPLPPCKYS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1959866 1961779 - CmaCh07G004480.1 Cma07g00448 297763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00448 637 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Cma07g00448 637 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Cma07g00448 637 Pfam Leucine rich repeat 128 189 IPR001611 GO:0005515
Cma07g00448 637 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cma07g00448 637 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 5 636 - -
Cma07g00448 637 SUPERFAMILY RNI-like 94 497 - -
Cma07g00448 637 SMART LRR_typ_2 543 567 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 224 247 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 248 272 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 344 367 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 591 622 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 368 392 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 127 150 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 151 175 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 463 486 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 296 320 IPR003591 -
Cma07g00448 637 SMART LRR_typ_2 439 462 IPR003591 -
Cma07g00448 637 SMART LRR_sd22_2 368 388 - -
Cma07g00448 637 SMART LRR_sd22_2 320 346 - -
Cma07g00448 637 SMART LRR_sd22_2 151 181 - -
Cma07g00448 637 SMART LRR_sd22_2 224 250 - -
Cma07g00448 637 SMART LRR_sd22_2 251 274 - -
Cma07g00448 637 SMART LRR_sd22_2 519 545 - -
Cma07g00448 637 PRINTS Leucine-rich repeat signature 227 240 - -
Cma07g00448 637 PRINTS Leucine-rich repeat signature 344 357 - -
Cma07g00448 637 Gene3D Ribonuclease Inhibitor 383 637 IPR032675 -
Cma07g00448 637 SUPERFAMILY L domain-like 386 634 - -
Cma07g00448 637 Gene3D Ribonuclease Inhibitor 25 193 IPR032675 -
Cma07g00448 637 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Cma07g00448 637 Gene3D Ribonuclease Inhibitor 290 382 IPR032675 -
Cma07g00448 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 636 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00448 - - - csv:101207198 1078.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01273 Cma-Chr4:6498674 Cma07g00448 Cma-Chr7:1959866 2.71E-110 dispersed
Cma07g00448 Cma-Chr7:1959866 Cma18g00816 Cma-Chr18:7123618 1.73E-96 dispersed
Cma20g00245 Cma-Chr20:1195883 Cma07g00448 Cma-Chr7:1959866 3.42E-20 dispersed
Cma16g00645 Cma-Chr16:3354250 Cma07g00448 Cma-Chr7:1959866 9.61E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00448 Cma_Chr07 FPKM 1.062173 1.645641 0.24029 0.364641 16.135866 14.46078 17.101265 0.037308 0.0 0.0