Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00451 ATGGCGCTTGGAAGGCCCCGCAGTAGCAAGAGATCCTCCTCTTCTTCCTATGCTTCCACTGTTACAACCCTCATCTTCTTAGCCTTATGTGTTCTCGGAATATGGATGCTCACCTCCAGCTCTGTTGTACCTCCGCAGACCACCACTCGAACTTCTTCCGATACCTCCACAGCTACTACCACCATGGACAATCTCCAACTACCCAGATCAGAGGATAAGGAGGCCTCCGCGGTGTTCGAGGATAATCCTGGTGATCTCCCTCTTGATGCTATTAAATCCGATGATAGTAATGATAGTAATATTATCGATGACCGATCAAAGGACAATGCCAGTGACGAGCAGGAATCTAGAGACCAAGACGGGGGTGGCGGAAATGAGGCTCAATTGTCGGAGGAGAGTGCAATGACTCAGAACCAACAAGTGGCTGAGAGCCAAAAAGTAGTAGAGGAGAAGGTAGACTTGGGAGGGAGCCAAGAACAAAACGCTAATTCATCTGATCAAAGCAATGAATCCACGGAGACTGTGGAATCTGATAATAATAAATCGAATGAAGCATCGCTCGAGATTAATCCTCAAGAACAACCACAAGAACAGCTTCCGGAAGAGCCTGAAAACAATGGTAGTCAACAAGAAATTCCACAAGCAATTACAAATGAAGAGCAGCAGCAGCAGCAGCAACAGCAAGCAACCGACATCCCAGAAAACAGCGGAGACTCTCAAACCGATCAACAGCAAGCAGCCGACATCCCAGAAAACAGCGGAGACTCTCAAACCGATCAACAGCAAGCAGCCGACATCCCAGAAAACAGCGGAGACTCTCAAACCGATCAACAGCAAGCAGCCGACATCCCAGAAAACAGCGGAGACTCTCAAACCGATCAACAGCAAGCAGCCGACATTCCAGAAAACAGCGGAGATTCTCAAACCGATCAACAGCAAGCAGCCGACATCCCAGAAAACAGCGGAGACTCTCAGACCGATCAACAGCAAGCAGCCGACATCCCAGAAAACGGCGGAAGCTCTGAAAACGATCAACAGAAACCTGAAACTGAAGCTGAAAAAGTCCCACAAGAATCTGAAATACATAACCAGGATGATGACAAGACCGAACAACAGATACAACAGCAACAACAACAGGACAGTTCAAACACGAACAACAGTGAAGAAACTGCGTCGGAGCAAAATCAGCCACGAGAGGAACATCGACGCAACAAAATGCCAACTGAGAATCAAGAATCACAGAAAACTGAATCCAGGGAGAACCAAGAAACACCAAAGGACTCAAAAACAACAGAAAACAAAGTGGAAGAGCCAACCACGGCAGGGTCACTTGATACCTCGGCAATACCCAAAGAGTCGAAGGAGTCTAAAAAGTCGTGGTCGACACAAGCCGCGCAATCGGAGAACGAGAAAGATCGCCGGCGGGAAGAATCCACTAGCAACGGCAGCATCTACGGGTACACTTGGCAGCTCTGCAACGTCACGGCAGGCACCGATTACATCCCCTGTTTAGACAACGAGAAAGCACTGAAGCAGCTGCGTACGACAAAGCACTTCGAGCACCGGGAGAGGCACTGCCCCGAGGAGGGACCCACCTGCCTTGTCGCACTGCCAGAGAATTACAAAAGATGCATCGAATGGCCCAAAAGCAGGGACAAGATTTGGTACCACAATGTGCCGCATACAAAGCTAGCCGAAGTTAAAGGCCACCAAAACTGGGTCAAGGTCACGGGCGAGTTCTTGACTTTTCCCGGCGGTGGCACCCAGTTCATCCACGGCGCTCTCCACTACATAGATTTTATTCAACAGGCTGTACCGGATATTGCATGGGGGAAGAGGACAAGAGTGGTATTGGACGTGGGCTGTGGAGTTGCCAGCTTCGGCGGCTATCTGTTCGAAAAGGATGTTCTTACAATGTCGTTTGCTCCAAAAGACGAGCATGAAGCTCAGGTTCAATTCGCACTTGAGCGGGGAATTCCGGCCATTTCTGCTGTCATGGGCTCACAACGTCTGCCATTTCCAAGCATGGTTTTTGACATTATTCACTGTGCTCGATGTAGAGTGCCTTGGCATGCAGAAGGTGGGATGCTTCTCTTAGAATTGAACCGAGTGCTGAGGCCAGGTGGATTTTTTGTTTGGTCTGCAACTCCCGTGTATCAGAGCCTGGAAGAAGACGTCGAAATTTGGAAGGAAATGTCTGATTTGACGAAGTCCATGTGTTGGGAGCTAGTGACGATTCAGAAAGACAAGCTGAATTCCATTGGGGCCGCCATTTACAGGAAACCAGCCTCAAATGAATGCTACGATCAAAGAAAACACAAGCGTCCTCCCATGTGCAAAAACGACGATGATCCGAACGCAGCTTGGTACGTGCCATTGCGAGCGTGCATGCACCGTGTACCAGTTGACAATGCAATGAGGGGAAGCAACTGGCCACAACAATGGCCGAAGCGATTGAAAGCACCTCCTTACTGGCTAAACAGCTCCCAAATGGGGATTTATGGAAAACCAGCTCCGCAAGATTTCACAACTGATTATGAACATTGGAAAAGAGTTGTGAATAAAACTTACATGAGTGGATTAGGCATAAATCTGTCTAACATCAGAAATGTGATGGATATGAGATCTGTTTATGGCGGGTTTGCAGCAGCGTTGAGAGACCTTAAAGTCTGGGTAATAAATGTGGTGAATATTGACTCTCCCGATACACTTCCGGTGATCTACGAGCGCGGTCTCTTTGGGATTTACCATGATTGGTGTGAGTCGTTCAGCACATATCCAAGAACATATGATCTACTACACGCTGATCATCTTTTCTCAAAGTTGAAAAAGAGGTGCAAACTGCAGCCTGTCTTGGCAGAGGTGGATCGAATAGTGAGGCCTGGAGGCAAATTGATTATCCGAGATGAATCCAGCACGATTGGAGAAGTGGAGAACCTGTTGAAGTCTCTCCGTTGGGAAGTTCACTTGACCTTCTCCAAAAATCAGGAAGGGCTTCTGAGTGCTCAGAAAGGCGATTGGAGACCAGATACTTATGCAGAGTCTTCCTGA 3051 48.28 MALGRPRSSKRSSSSSYASTVTTLIFLALCVLGIWMLTSSSVVPPQTTTRTSSDTSTATTTMDNLQLPRSEDKEASAVFEDNPGDLPLDAIKSDDSNDSNIIDDRSKDNASDEQESRDQDGGGGNEAQLSEESAMTQNQQVAESQKVVEEKVDLGGSQEQNANSSDQSNESTETVESDNNKSNEASLEINPQEQPQEQLPEEPENNGSQQEIPQAITNEEQQQQQQQQATDIPENSGDSQTDQQQAADIPENSGDSQTDQQQAADIPENSGDSQTDQQQAADIPENSGDSQTDQQQAADIPENSGDSQTDQQQAADIPENSGDSQTDQQQAADIPENGGSSENDQQKPETEAEKVPQESEIHNQDDDKTEQQIQQQQQQDSSNTNNSEETASEQNQPREEHRRNKMPTENQESQKTESRENQETPKDSKTTENKVEEPTTAGSLDTSAIPKESKESKKSWSTQAAQSENEKDRRREESTSNGSIYGYTWQLCNVTAGTDYIPCLDNEKALKQLRTTKHFEHRERHCPEEGPTCLVALPENYKRCIEWPKSRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFIQQAVPDIAWGKRTRVVLDVGCGVASFGGYLFEKDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPFPSMVFDIIHCARCRVPWHAEGGMLLLELNRVLRPGGFFVWSATPVYQSLEEDVEIWKEMSDLTKSMCWELVTIQKDKLNSIGAAIYRKPASNECYDQRKHKRPPMCKNDDDPNAAWYVPLRACMHRVPVDNAMRGSNWPQQWPKRLKAPPYWLNSSQMGIYGKPAPQDFTTDYEHWKRVVNKTYMSGLGINLSNIRNVMDMRSVYGGFAAALRDLKVWVINVVNIDSPDTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCKLQPVLAEVDRIVRPGGKLIIRDESSTIGEVENLLKSLRWEVHLTFSKNQEGLLSAQKGDWRPDTYAESS 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1966524 1970530 - CmaCh07G004510.1 Cma07g00451 297766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00451 1016 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 813 987 IPR029063 -
Cma07g00451 1016 MobiDBLite consensus disorder prediction 43 66 - -
Cma07g00451 1016 MobiDBLite consensus disorder prediction 435 449 - -
Cma07g00451 1016 MobiDBLite consensus disorder prediction 43 480 - -
Cma07g00451 1016 MobiDBLite consensus disorder prediction 87 120 - -
Cma07g00451 1016 MobiDBLite consensus disorder prediction 156 345 - -
Cma07g00451 1016 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 499 1003 IPR004159 GO:0008168
Cma07g00451 1016 PANTHER METHYLTRANSFERASE PMT27-RELATED 7 1014 - -
Cma07g00451 1016 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 522 767 IPR029063 -
Cma07g00451 1016 MobiDBLite consensus disorder prediction 370 392 - -
Cma07g00451 1016 MobiDBLite consensus disorder prediction 393 434 - -
Cma07g00451 1016 MobiDBLite consensus disorder prediction 346 369 - -
Cma07g00451 1016 Gene3D Vaccinia Virus protein VP39 596 774 IPR029063 -
Cma07g00451 1016 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 7 1014 IPR004159 GO:0008168
Cma07g00451 1016 MobiDBLite consensus disorder prediction 129 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00451 - - - cmos:111463092 1867.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00706 Cma07g00451 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01107 Cma-Chr3:7562357 Cma07g00451 Cma-Chr7:1966524 1.18E-10 dispersed
Cma04g00137 Cma-Chr4:640577 Cma07g00451 Cma-Chr7:1966524 0 dispersed
Cma04g01105 Cma-Chr4:5682904 Cma07g00451 Cma-Chr7:1966524 0 dispersed
Cma04g01165 Cma-Chr4:5945905 Cma07g00451 Cma-Chr7:1966524 1.53E-171 dispersed
Cma04g02939 Cma-Chr4:19386244 Cma07g00451 Cma-Chr7:1966524 3.50E-170 dispersed
Cma07g00451 Cma-Chr7:1966524 Cma07g00809 Cma-Chr7:3722216 6.59E-17 dispersed
Cma01g01907 Cma-Chr1:12448647 Cma07g00451 Cma-Chr7:1966524 0 transposed
Cma03g00706 Cma-Chr3:5745993 Cma07g00451 Cma-Chr7:1966524 1.32E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1064 . . Bda04g00033 Bda10g00167 Bpe15g00369 . Bma09g00097 Bma15g00971 . . Cma03g00706 Cma07g00451 Car03g00647 Car07g00398 Sed14g1170 Cpe19g00838 Cpe10g00647 Bhi03g00898 Tan03g2044 Cmetu04g1166 . Hepe04g1565 . . Cla01g01953 Cam01g2042 Cec04g1700 Cco04g1765 Clacu01g2064 Cmu01g1941 Cre04g1615 . . Cone6ag1660 . Lsi01g00630 . . Cme08g00900 Blo05g00816 Blo06g00330 . . Bpe10g00139 Bpe06g00031 . . . Cmo03g00732 Cmo07g00448 . . . . . . . . . . . . . . . . . . . . . Csa06g03295 Chy02g00601 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000953 3 2 4 3 4 2 4 2 2 3 2 2 4 2 2 4 2 6 4 2 3 2 2 2 2 2 2 5 3 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00451 Cma_Chr07 FPKM 0.5343 0.437308 0.0 0.277677 0.139614 0.221833 0.0 0.56558 0.716129 1.029467