Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00452 ATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAAACCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCATAACAACAACAACAACAACAACAACAATCTGTACTCGGATGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAGAGACTGTACTCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATAACATTCCCACCACCAACACTTCTGGGTTAGAAATTGGGAATTTCCCAGCGGAATTGAACTCCCCGGCTGTATTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCGGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATGTTCCTGGTGAGACCTCGTCCAGCGGCGGCGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCCTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAA 861 52.38 MSMSGFFTLGSTDQEHQQTDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQTRSHNNNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKRDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSSGGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1973447 1974657 + CmaCh07G004520.1 Cma07g00452 297767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00452 286 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 3 282 IPR007818 GO:0003700|GO:0006355
Cma07g00452 286 MobiDBLite consensus disorder prediction 1 32 - -
Cma07g00452 286 PANTHER PROTEIN SHORT INTERNODES 3 282 - -
Cma07g00452 286 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 174 221 IPR006511 -
Cma07g00452 286 Pfam Domain of unknown function (DUF702) 96 222 - -
Cma07g00452 286 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 98 140 IPR006510 -
Cma07g00452 286 MobiDBLite consensus disorder prediction 1 29 - -
Cma07g00452 286 MobiDBLite consensus disorder prediction 45 83 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00452 Cma16g00640 CCT
Cma07g00452 Cma16g00640 ECH
Cma03g00708 Cma07g00452 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00769 Cma-Chr4:3906567 Cma07g00452 Cma-Chr7:1973447 9.21E-69 dispersed
Cma07g00452 Cma-Chr7:1973447 Cma19g00283 Cma-Chr19:2141068 4.67E-68 dispersed
Cma01g01939 Cma-Chr1:12590607 Cma07g00452 Cma-Chr7:1973447 1.25E-59 wgd
Cma12g00430 Cma-Chr12:2242402 Cma07g00452 Cma-Chr7:1973447 8.19E-67 wgd
Cma16g00640 Cma-Chr16:3315182 Cma07g00452 Cma-Chr7:1973447 9.96E-61 wgd
Cma03g00708 Cma-Chr3:5754845 Cma07g00452 Cma-Chr7:1973447 2.33E-116 wgd
Cma05g00281 Cma-Chr5:1203604 Cma07g00452 Cma-Chr7:1973447 4.40E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35363 PF05142 DUF702 2.00E-53 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00452 - - cmax:111497365 508.449