Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00454 ATGGCAGCGATTTCACAGTTTATAGTTCTGCTTCTGTTAATCTCTCTCGCCAATCTCTGCAATGGAGGTATTACCAGTAAATTCATGAGGAAACTTGAAGCTTCTGTCGATATGCCTGCAGGAGCTTTCCCCCCGCCCGCCGGTTACAACGCACCCGAACAGGTTCACATTACACAGGGAGATCGCCATGGCAGAGGCGTTATAATTTCGTGGGTGACGCCATTGTCGCCCAAACCTACTGTTGTCAGATATTGGGCGGCGGATGGGGACGGGAATCGCCGCAATAAAGCACATTCCAGAATCACCACTTACAAATATTATAATTACACTTCTGCATTCATCCACCACGCCACCATAAACAATCTTGAGTACGACACTAAATACTTCTACGAGCTTGGAAGTGGCAATGCAACGCGTCAGTTTTTCTTCACAACGCCTCCCAGGGTCGGTCCAGATGTTCCATACACATTCGGCATCATTGGCGATCTTGGACAGACTTATGATTCGAACCAAACGTTGGAGCATTATTATTCAAATCCGAAGGGACAAGCGGTTCTGTTCGCCGGAGACCTCTCATACGCCGATAATCATCCGTTTCACGACAATAGGAAGTGGGATACATGGGGTCGATTTGTGGAGAAGAGCACTGCGTATCAGCCATGGATTTGGACCGCCGGTAACCACGAAATAGATTTTGCTCCACAAATTGGAGAAAACACCCCTTTTAAACCTTATACTCATCGGTATCACGTTCCTTATAAAACTGCGCAAAGCACATCCCCACTCTGGTATTCGATCAAGCGTGCATCTGCCTACATTATAGTCCTTTCTTCTTACTCAGCTTATGGCAAATATACTCCACAATATGAGTGGCTACAGAAGGAGTTTAAGAAGGTGAAGAGAGATGAGACTCCATGGTTGATTGTTATGCTTCATGCTCCTTGGTATAATAGTTACAATTACCATTATATGGAAGGAGAGAGCATGAGGGTCATGTTTGAATCATGGTTTATTCAGAACAAAGTTGATATTGTTCTTTCTGGCCATATCCATGCTTATGAGCGTTCGGAGCGAGTGTCGAACGTGAGATACAATATAACGAATAGATTATGCAGTCCAGTTAGAGACGTTAACGCACCGATCTACATAACCATCGGCGACGGCGGGAATATTGAAGGCCTGGCTAACGAGTTTACGGAGCCACAACCAAGTTACTCGGCGTTTAGGGAGGCAAGCTTTGGGCATGCAATTCTTGAAATAAAGAATCGAACTCATGCATATTATACATGGCATCGCAACCATGACAACGAACCTGTTTCTGCTGATTCACTTTGGATATATAACAGATATTGCCTTTACGCCTCGAAGCTGCATTTCCATTTTCCTTGGAGAACTGTGAATCGGCTGATTCAACCCACTGGAGCTGAAGGTCAAAGAGAATCCAACTATATGAGGAAGCGAGATTTAGCCATTCTTATGCTATCAGCCTTCGCTATTTTTTTCTCCCTTCAGCATGAAGGCCATTTCTCGTTTAGGGAGGCATGGATGCATCTCACTGATGAGTACCCGATCAAGTATGAAGGTGATCGTCTCCCGCCACCTATCGTCGCCGATCTTAATGGTGATGGAAAGAAGGAGGTTCTTGTGGCGACACATGATGCTAAAATTATGGTTTTGGAACCCCATATTAGGCGAGTGGATGAGGGATTTAGTAATGCACGTGTGCTGACAGAGGTCTCTTTGTTGCCTGATAAAGTACGCGTTTCATCTGGTAGACGTCCAGTAGCCATGGCTACTGGAATTATCTATCGGCATCCCAGACATGGTCAACCAGTGACCCAGGTTCTTGTTGTTGTTACATCCGGTTGGTCTGTAATGTGCTTTGATCACAATCTCAAGAAGTTATGGGAAACAAATCTGCAGGAGGATTTTCCACATAATGCTCACCACAGAGAGATAGCAATCTCGATAAGCAATTATACCCTAAAGCATGGTGATTCAGGATTGGTTATTGTTGGTGGGAGAATGGAAATGCAGCCACGTATTTTTATGGATCCCTTTGAAGAATTTGGAATTGGAGAAAAGAAAGCTGAGCAGCATAGAAGAAGTGCTACCGAAAAGGAGACTTCTGAGAACTCTGGGGCAGTACATTTACGCCATTTTGCATTTTATGCGTTTGCTGGTCGATCTGGTGTGCTACGATGGAGCAGGAAGAATGAGAACATTGAGGCACATTCTTCAGATGCATCACAGTTAACTCCACAGCATAATTACAGGCTCGATGTTCATTCTCTGAATGCTCGACATCCTGGAGAGTTTGAGTGCAGGCAATTTAGAGAATCGGTCCTTGGAGTTATGCCACACCACTGGGATAGGAGAGAAGACACTGTGCTAGAGTTGGCACACTTCAGGCGACATAAAAGGAAAATGCTGAAGAAAACATCTGGAAAATCAATTAATTTTCCTTTTCACAAGCCTGAGGAAAACCATCCACCTGGGAAGGACTCGAGTAAAAGGATTCCTAAAATTATTGGCAGTGCTGCAAATATTGCTGGTTCAGCAAAAACTAAGAAGCGTCTCCCATATGTTCCTACCATAACTAACTATACCAAGCTTTGGTGGCTTCCTAATGTTGTCGTGGCTCATCAAAAAGAAGGTATAGAAGCTCTGCATTTGGCATCTGGCCGCACTGTTTGCCAGGTACATCTTCAAGAAGGTGGTTTGCATGCTGATATCAATGGAGATGGAGTCCTTGATCATGTTCAGGCTGTTGGAGGAAATGGTGCTGAGCGCACTGTGGTTACTGGATCAATGGAAGTTATTCAACCATGTTGGGCTATTGCAACCTCTGGGGTACCTGTACGAGAACAACTCTTTAATGCTTCCATATGCCATTTTTCCCCTTTTAACTTCTTCCAACACGGAGAACTTTCAAATTTTGGCCGTATTCCAGACATTGGTTCTTTAGAGGTTGCAACTCCCATTATTATCCCAAGAGAAGATGATCATAGGCATCGTAAGGGAAGCCATGGCGATGTTGTTTTCTTGACCAACCGAGGAGAGGTAACGTCGTATTCACCTGGATTGCACGGTCATGGTGCCGATTGGCAGTGGCAGATTTTAACAGGTGCTTCTTGGTCTAATCTTCCATCTCCATCAGGAATGATGGAAGCTGGTACAGTGATTCCCACACTCAAGACGATCTACTTGCGAGTGCATGACGATCGAGCAATGGTCCTTGCTGCAGGAGAACAAGAAGCCATAGTCATATCTCCTGGGGGAAGCATACAGGCATCAATCGATCTTCCTGCCTCTCCTACCCATGCCCTCATCTGCGAGGACTTCTCAAACGATGGTCTTACAGATATTATCCTTGTGACCTCTACTGGGGTGTATGGCTTTGTCCAGACCAGGCAACCAGGGGCCCTCTTTTTCAGTACGCTGGTGGGCTGCCTCATCCTTGTAATGGGAGTCATTTTTGTTATCCAACACTTGAATTCGATTAAGGGAAAGCCTCGGCCTTCAACCAATTGGTAA 3537 45.12 MAAISQFIVLLLLISLANLCNGGITSKFMRKLEASVDMPAGAFPPPAGYNAPEQVHITQGDRHGRGVIISWVTPLSPKPTVVRYWAADGDGNRRNKAHSRITTYKYYNYTSAFIHHATINNLEYDTKYFYELGSGNATRQFFFTTPPRVGPDVPYTFGIIGDLGQTYDSNQTLEHYYSNPKGQAVLFAGDLSYADNHPFHDNRKWDTWGRFVEKSTAYQPWIWTAGNHEIDFAPQIGENTPFKPYTHRYHVPYKTAQSTSPLWYSIKRASAYIIVLSSYSAYGKYTPQYEWLQKEFKKVKRDETPWLIVMLHAPWYNSYNYHYMEGESMRVMFESWFIQNKVDIVLSGHIHAYERSERVSNVRYNITNRLCSPVRDVNAPIYITIGDGGNIEGLANEFTEPQPSYSAFREASFGHAILEIKNRTHAYYTWHRNHDNEPVSADSLWIYNRYCLYASKLHFHFPWRTVNRLIQPTGAEGQRESNYMRKRDLAILMLSAFAIFFSLQHEGHFSFREAWMHLTDEYPIKYEGDRLPPPIVADLNGDGKKEVLVATHDAKIMVLEPHIRRVDEGFSNARVLTEVSLLPDKVRVSSGRRPVAMATGIIYRHPRHGQPVTQVLVVVTSGWSVMCFDHNLKKLWETNLQEDFPHNAHHREIAISISNYTLKHGDSGLVIVGGRMEMQPRIFMDPFEEFGIGEKKAEQHRRSATEKETSENSGAVHLRHFAFYAFAGRSGVLRWSRKNENIEAHSSDASQLTPQHNYRLDVHSLNARHPGEFECRQFRESVLGVMPHHWDRREDTVLELAHFRRHKRKMLKKTSGKSINFPFHKPEENHPPGKDSSKRIPKIIGSAANIAGSAKTKKRLPYVPTITNYTKLWWLPNVVVAHQKEGIEALHLASGRTVCQVHLQEGGLHADINGDGVLDHVQAVGGNGAERTVVTGSMEVIQPCWAIATSGVPVREQLFNASICHFSPFNFFQHGELSNFGRIPDIGSLEVATPIIIPREDDHRHRKGSHGDVVFLTNRGEVTSYSPGLHGHGADWQWQILTGASWSNLPSPSGMMEAGTVIPTLKTIYLRVHDDRAMVLAAGEQEAIVISPGGSIQASIDLPASPTHALICEDFSNDGLTDIILVTSTGVYGFVQTRQPGALFFSTLVGCLILVMGVIFVIQHLNSIKGKPRPSTNW 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1976796 1985396 - CmaCh07G004540.1 Cma07g00454 297769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00454 1178 Gene3D - 150 457 IPR029052 -
Cma07g00454 1178 MobiDBLite consensus disorder prediction 817 840 - -
Cma07g00454 1178 CDD MPP_PAPs 151 448 IPR041792 -
Cma07g00454 1178 Pfam Calcineurin-like phosphoesterase 156 353 IPR004843 GO:0016787
Cma07g00454 1178 SUPERFAMILY Metallo-dependent phosphatases 151 450 IPR029052 -
Cma07g00454 1178 SUPERFAMILY Integrin alpha N-terminal domain 505 1129 IPR028994 -
Cma07g00454 1178 Pfam Iron/zinc purple acid phosphatase-like protein C 379 437 IPR025733 -
Cma07g00454 1178 MobiDBLite consensus disorder prediction 823 837 - -
Cma07g00454 1178 Pfam Purple acid Phosphatase, N-terminal domain 52 145 IPR015914 GO:0003993|GO:0046872
Cma07g00454 1178 SUPERFAMILY Purple acid phosphatase, N-terminal domain 41 147 IPR008963 GO:0003993|GO:0046872
Cma07g00454 1178 Gene3D - 51 148 - -
Cma07g00454 1178 PANTHER FG-GAP REPEAT-CONTAINING PROTEIN 484 1175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00454 - - - csv:101223217 1297.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00709 Cma07g00454 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00710 Cma-Chr3:5767510 Cma07g00454 Cma-Chr7:1976796 0 dispersed
Cma07g00454 Cma-Chr7:1976796 Cma11g01090 Cma-Chr11:6004373 0 dispersed
Cma17g00099 Cma-Chr17:483372 Cma07g00454 Cma-Chr7:1976796 1.27E-73 dispersed
Cma12g00436 Cma-Chr12:2279538 Cma07g00454 Cma-Chr7:1976796 0 wgd
Cma03g00709 Cma-Chr3:5760841 Cma07g00454 Cma-Chr7:1976796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1062 . . Bda04g00034 . . . Bma09g00095 . . . Cma03g00709 Cma07g00454 Car03g00650 Car07g00400 Sed14g1168 Cpe19g00836 Cpe10g00645 Bhi03g00900 Tan03g2041 Cmetu04g1736 . Hepe04g1563 . . Cla01g01951 Cam01g2040 Cec04g1698 Cco04g1763 Clacu01g2062 Cmu01g1939 Cre04g1613 . . . Cone9ag1582 Lsi01g00632 . . Cme08g00898 Blo05g00814 . . . . Bpe06g00033 . . . Cmo03g00735 Cmo07g00451 . . . . . . . . . . . . . . . . . . . . . Csa06g03293 Chy02g00603 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0028005 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00454 Cma_Chr07 FPKM 1.350922 1.991751 1.505115 1.797844 3.794495 3.228596 4.057203 0.357951 0.231796 0.253901