Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00455 CGGTTTTCTCAGAGATTCGTAAAAAGTAAGAGAATAATGGCAGCCGCAGCAGAGGGACGAGTCATTCGCTGTAACACCATTGGTTCATGGAACCAACAAATTCAGAAGGGCAATGCCTCTGAGGAGCTTATAGTTGTGGATTTCTCTGCATCATGGTGCGGTCCATGTCGGTTCATTGAACCTTTTCTAAACCAGCTTGCTCAAAAATTTCCCACTGTCACATTTCTAAAGGTTGATGTGGATGATCTTGAGTCTGTAGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTCATGTTCCTGAAAGAGGGAAGAATTGTGGACAAAGTGGTTGGAGCTAAGAAGGAAGAACTGCAGCAGACTGTATTCAAGCATATGTCTGCTACTGCTTCTGCTTGA 399 44.61 RFSQRFVKSKRIMAAAAEGRVIRCNTIGSWNQQIQKGNASEELIVVDFSASWCGPCRFIEPFLNQLAQKFPTVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMSATASA 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1987884 1989317 + CmaCh07G004550.1 Cma07g00455 297770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00455 132 SUPERFAMILY Thioredoxin-like 17 126 IPR036249 -
Cma07g00455 132 CDD TRX_family 32 122 - -
Cma07g00455 132 ProSiteProfiles Thioredoxin domain profile. 3 127 IPR013766 -
Cma07g00455 132 Gene3D Glutaredoxin 4 131 - -
Cma07g00455 132 PRINTS Thioredoxin family signature 44 52 - -
Cma07g00455 132 PRINTS Thioredoxin family signature 91 102 - -
Cma07g00455 132 PRINTS Thioredoxin family signature 52 61 - -
Cma07g00455 132 PANTHER THIOREDOXIN 16 128 - -
Cma07g00455 132 Pfam Thioredoxin 28 122 IPR013766 -
Cma07g00455 132 ProSitePatterns Thioredoxin family active site. 45 63 IPR017937 -
Cma07g00455 132 PANTHER THIOREDOXIN 16 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00455 K03671 trxA; thioredoxin 1 - csv:101203181 192.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00711 Cma07g00455 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00455 Cma-Chr7:1987884 Cma11g01043 Cma-Chr11:5725970 8.74E-36 dispersed
Cma16g00782 Cma-Chr16:4299753 Cma07g00455 Cma-Chr7:1987884 3.81E-17 dispersed
Cma01g01935 Cma-Chr1:12574707 Cma07g00455 Cma-Chr7:1987884 8.69E-47 wgd
Cma12g00439 Cma-Chr12:2293396 Cma07g00455 Cma-Chr7:1987884 3.38E-28 wgd
Cma03g00711 Cma-Chr3:5772341 Cma07g00455 Cma-Chr7:1987884 2.64E-78 wgd
Cma05g00272 Cma-Chr5:1155062 Cma07g00455 Cma-Chr7:1987884 2.18E-29 wgd
Cma07g00455 Cma-Chr7:1987884 Cma09g00130 Cma-Chr9:561624 2.73E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00455 Cma_Chr07 FPKM 13.985525 13.720179 4.779659 5.937241 6.751924 6.527952 5.113343 0.0 0.654735 0.614391