Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00458 ATGCTTCGTCCCCATAAAAATCTATGCAGGTTCATCAACGCCCTGAACCACGACCAATTCCTTCACTGTACACGCTCGGCATCCTCTTATCAATACAACCACAGAAACCATGGCGAGAAAGAAAACGTTCCCAAGGATGGGAACGAAGAACCTCAATTGTATTTCTACAAGAGTAGAGGCCAGCACATTCTTACGAACCCACGAATTCTGGGCTCTATTGTTCGAAAATCTGCCATAAGGCCGACCGACACGGTCTTAGAGATCGGACCCGGCACCGGAAATCTGACATTGAAGCTTCTGGAAGCTTCCCAAAAGGTCATAGCCATTGAAATTGATAAAAGAATGGTCGAGGTTCTGCACAGACGCGTGGCGGAGAATAAGTTTGAAGACCGTATTTGTGTTATACGCGAAGATGCTTTGAAATGTGAGTTCCCTCCTTTCGACCTCGTCGTGGCCAACATCCCTTATGGGATATCTTCGCCGCTTGTGGCCAAATTGGTATATGGGGCAATTCCATTTCGGAGTGCCACGCTTCTACTTCAGAAAGAGTTTGCACGGCGGTTGTTGGCGAATCCTGGTGACTCTGAGTACAATCGTTTGGCTGTAAATGTGAAATTGGTGGCTGATGTAGAGCATGTAATGGATGTAAGCAAGAGGGACTTTGTTCCTTGTCCTAAAGTCGACTCATCCGTGGTGATAATCCGCCCCAAGAAGGAAGTTCCTGAAGTGAACCTGGAAGAATGGCGGGCTTTCACTAGAACTTGCTTTGGGAAGAAGAACAAGACACTTGGGGCAACGTTCAAGCAGAAGAGGATGCTGATGGCCCTAATGAACTCCAATTCTGAGAGTTTCAATGGTCGAGGAGTTGAAGAAGAGGGCTGTTCTTCATCTTCAGAGAAGGGGTTTAATTTGTTCAAGGAGAAAATCATAGAGGTTTTGAAATCTGGGAAGTTTGAAGATAAGAGGCCTGCAAAGTTGTGTAACTTGAAGTTGCTGCATTTGCTGGCGTTGTTCAATCAAGCTGGGATATATTTTCGTGATGGATCAGAGCTTCAGGATGCAGAGAGAAGCGCCTTAGCTGATGATGCCTACGGATCAGAACTAGAAGATTAG 1113 46.09 MLRPHKNLCRFINALNHDQFLHCTRSASSYQYNHRNHGEKENVPKDGNEEPQLYFYKSRGQHILTNPRILGSIVRKSAIRPTDTVLEIGPGTGNLTLKLLEASQKVIAIEIDKRMVEVLHRRVAENKFEDRICVIREDALKCEFPPFDLVVANIPYGISSPLVAKLVYGAIPFRSATLLLQKEFARRLLANPGDSEYNRLAVNVKLVADVEHVMDVSKRDFVPCPKVDSSVVIIRPKKEVPEVNLEEWRAFTRTCFGKKNKTLGATFKQKRMLMALMNSNSESFNGRGVEEEGCSSSSEKGFNLFKEKIIEVLKSGKFEDKRPAKLCNLKLLHLLALFNQAGIYFRDGSELQDAERSALADDAYGSELED 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1999057 2000716 + CmaCh07G004580.1 Cma07g00458 297773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00458 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 54 269 IPR029063 -
Cma07g00458 370 SMART rADcneu6 69 238 IPR020598 GO:0000154|GO:0000179|GO:0008649
Cma07g00458 370 Gene3D - 241 346 - -
Cma07g00458 370 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 85 112 IPR020596 GO:0000154|GO:0000179|GO:0008649
Cma07g00458 370 PANTHER DIMETHYLADENOSINE TRANSFERASE 11 345 IPR001737 -
Cma07g00458 370 Gene3D Vaccinia Virus protein VP39 55 240 IPR029063 -
Cma07g00458 370 CDD AdoMet_MTases 84 167 - -
Cma07g00458 370 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 55 342 IPR001737 -
Cma07g00458 370 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE, MITOCHONDRIAL 11 345 - -
Cma07g00458 370 Pfam Ribosomal RNA adenine dimethylase 57 270 IPR001737 -
Cma07g00458 370 TIGRFAM ksgA: ribosomal RNA small subunit methyltransferase A 56 335 IPR011530 GO:0000179|GO:0006364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00458 K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] - csv:101203673 556.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00291 Cma-Chr1:1396879 Cma07g00458 Cma-Chr7:1999057 1.31E-82 dispersed
Cma06g01110 Cma-Chr6:7489894 Cma07g00458 Cma-Chr7:1999057 6.77E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1056 . . Bda04g00036 . . . Bma09g00094 . . . . Cma07g00458 . Car07g00404 Sed06g1238 Cpe19g00832 . Bhi03g00905 Tan03g2037 Cmetu02g1762 . Hepe04g1559 . . Cla01g01947 Cam01g2035 Cec04g1693 Cco04g1758 Clacu01g2057 Cmu01g1934 Cre04g1608 . . Cone6ag1654 . Lsi01g00637 . . Cme08g00893 Blo05g00813 . . . . Bpe06g00036 . . . . Cmo07g00455 . . . . . . . . . . . . . . . . . . . . . Csa06g03289 Chy02g00607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011898 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00458 Cma_Chr07 FPKM 1.741566 0.974144 2.635455 3.042618 5.560302 3.505855 5.542658 2.190777 2.491323 3.572419