Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00464 ATGCAATTGCAGTGCCAAGCTCCAGTTGCTATGTTTTTGACAATTCTAGTCACATCATTGACTTTGTATCCTACTCAGAATGATTTTGGTCGATTTGATAAGTTCAACTACTTTGTCTCTGGTTCAGGACATGCCGACTTTGTTCAAGATTATTACAATGGCGACCTGACTTCTTTGCTCTTTGAATATGTTGATACTAGTGATGAACACATTCATCATCTTATTATAGGTGGTCTGGGATGCATCTGCAATATCACTTATGAGACCAGTTGCAGAGTTATTGTCGATCTTGCCATCCCTTGTGAGATACAAGGCCCACGTGTTTTCAAAGGGTTTACTGTTGGTTTTCACCCTCGATCTTGGGAAATTGTTTATAATGGTTTGACTCAATTAGGCTATGAGAAGCCACACCGTGCATTCAGCTTTAGCACAGAGCAGACTAGTGTGGTTCTTTATATGACTGCAATTGCATCACTTTCCTCTTTTGTACAGAAACCGATTATTCAGGTTTTTCCAGGAAATGGACTGGAGGTGGAAGTATCGGGCTCAGGGGCAACTGGGAGCTACCCCACAACTTTGTCACCCTCGATTTTGATGATTGAATGGAGATGTGACATTGCCAGGGACATTACATATGCTGTTAACGTCACAATCCCTGTGGCTGATTATGAACCAATTAGTTTTTTTCTTGCCAAAATGTGTGGCGTGAAAGCTAAACCTAAGTCTACCTTTGAGTTTCATATTTTGCAGAAAAAAGGCAAGACATTCATAGTCACAGCGTCGCTATTTTGCTGTGGAGGATTTGTTTACAAGACCCAAGTGCAAGGCCAGCGTGGAATTGATGCATTGCCGGGCATGACATTACTATCCGCCTGCTTGGAAACTGTGAGTGGTGCAGGACACAGCTACCCGAGAGCGGAAGGCTTCAACAATGCAATTGTCAGTGAAGCCTCCTGGGAGCGCCCATCATCCTCTTCCTCTTCTCGACCGACACGAATACCATCTGAGAAAAATTATGGTAGTATTGAATTAAGTAGGTTTGAGGGGATTGATGAGATCAAATCTGCATGGGAGAAAGAATGCCCACAAACATTTTGTAGTGCTGATATCTTGGCTTTGTCTGCAAGAGATTCCACTGTCATTACGGGTGGACCCTCTTGGGAGGTTCCATTGGGAAGGAATGACTCAAGAACTGCGAGTTTGAGTAGCTCTAACAACAACATTCCAGCTCCAAACAGCACTTTTCAAACCCTTCTCAATAGAACTTTCGCTCAAAACTCTGCCTCGGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTTGGAAAGATTGACATCGTCTTCATTGCTGAACCACCGGAATTACACTATTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTTGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGTTCGGCGGCTTGCAAAACACTGGCAAGGGTGGTTCTGGGGCGAAAGGGGGTGAAGAGAAGAAGGCGGAGAAGACGGCGTTTGATGTGAAGCTTGAAGCTTTTGATGCTGCGTCGAAGATCAAGGTCATTAAGGAAGTGCGAACGTTTACGAATTTGGGATTGAAGGAAGCGAAGGATTTGGTAGAGAAGGCGCCAACGCTTCTAAAGAAGGGGGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGGTTGGCGCCAAAGTTTCAATGGAGTGA 1824 44.96 MQLQCQAPVAMFLTILVTSLTLYPTQNDFGRFDKFNYFVSGSGHADFVQDYYNGDLTSLLFEYVDTSDEHIHHLIIGGLGCICNITYETSCRVIVDLAIPCEIQGPRVFKGFTVGFHPRSWEIVYNGLTQLGYEKPHRAFSFSTEQTSVVLYMTAIASLSSFVQKPIIQVFPGNGLEVEVSGSGATGSYPTTLSPSILMIEWRCDIARDITYAVNVTIPVADYEPISFFLAKMCGVKAKPKSTFEFHILQKKGKTFIVTASLFCCGGFVYKTQVQGQRGIDALPGMTLLSACLETVSGAGHSYPRAEGFNNAIVSEASWERPSSSSSSRPTRIPSEKNYGSIELSRFEGIDEIKSAWEKECPQTFCSADILALSARDSTVITGGPSWEVPLGRNDSRTASLSSSNNNIPAPNSTFQTLLNRTFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTIASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQNTGKGGSGAKGGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEVGAKVSME 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2019481 2028922 - CmaCh07G004640.1 Cma07g00464 297779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00464 607 Pfam Ribosomal protein L7/L12 C-terminal domain 540 606 IPR013823 GO:0003735|GO:0006412
Cma07g00464 607 SUPERFAMILY ClpS-like 536 606 IPR014719 -
Cma07g00464 607 Pfam Peroxidase 343 426 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma07g00464 607 Gene3D Peroxidase, domain 2 409 426 - -
Cma07g00464 607 Gene3D - 343 408 - -
Cma07g00464 607 Pfam Ribosomal protein L7/L12 dimerisation domain 472 511 IPR008932 GO:0003735|GO:0005840|GO:0006412
Cma07g00464 607 Gene3D Single helix bin 474 536 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cma07g00464 607 Gene3D - 537 606 IPR014719 -
Cma07g00464 607 PRINTS Plant peroxidase signature 383 398 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma07g00464 607 PRINTS Plant peroxidase signature 345 358 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma07g00464 607 PRINTS Plant peroxidase signature 364 374 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma07g00464 607 CDD Ribosomal_L7_L12 469 606 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cma07g00464 607 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 472 542 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cma07g00464 607 ProSiteProfiles Plant heme peroxidase family profile. 307 458 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma07g00464 607 TIGRFAM L12: ribosomal protein bL12 472 606 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cma07g00464 607 PRINTS Haem peroxidase superfamily signature 383 395 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma07g00464 607 PRINTS Haem peroxidase superfamily signature 365 382 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma07g00464 607 SUPERFAMILY Heme-dependent peroxidases 338 422 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma07g00464 607 Hamap 50S ribosomal protein L7/L12 [rplL]. 468 607 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cma07g00464 607 PANTHER G-PROTEIN COUPLED RECEPTOR 28 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00464 - - - csv:101207936 443.351
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00717 Cma07g00464 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00912 Cma-Chr3:6612032 Cma07g00464 Cma-Chr7:2019481 2.15E-30 dispersed
Cma04g02702 Cma-Chr4:18266336 Cma07g00464 Cma-Chr7:2019481 1.98E-18 dispersed
Cma07g00464 Cma-Chr7:2019481 Cma18g00283 Cma-Chr18:1496768 9.99E-47 dispersed
Cma11g01434 Cma-Chr11:9448535 Cma07g00464 Cma-Chr7:2019481 1.08E-16 dispersed
Cma14g00655 Cma-Chr14:3267362 Cma07g00464 Cma-Chr7:2019481 1.63E-20 dispersed
Cma15g00344 Cma-Chr15:1595341 Cma07g00464 Cma-Chr7:2019481 3.02E-19 dispersed
Cma01g00441 Cma-Chr1:2220587 Cma07g00464 Cma-Chr7:2019481 7.83E-32 transposed
Cma03g00717 Cma-Chr3:5794253 Cma07g00464 Cma-Chr7:2019481 5.03E-164 transposed
Cma16g00634 Cma-Chr16:3271830 Cma07g00464 Cma-Chr7:2019481 4.02E-31 wgd
Cma03g00715 Cma-Chr3:5787857 Cma07g00464 Cma-Chr7:2019481 2.07E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1044 . . . . . . Bma09g00091 . . . Cma03g00717 Cma07g00464 Car03g00657 Car07g00411 . Cpe19g00826 Cpe10g00639 Bhi03g00913 . . . . . . . . . . . . . . . . Cone9ag1574 Lsi01g00642 . . Cme08g00889 . . . . . . . . . Cmo03g00743 Cmo07g00462 . . . . . . . . . . . . . . . . . . . . . Csa06g03284 Chy02g00612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002272 2 6 1 2 1 2 3 1 1 1 1 1 3 2 1 3 1 2 3 2 2 2 2 1 2 2 1 5 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00464 Cma_Chr07 FPKM 7.02193 5.708621 6.035633 6.206101 12.113489 11.793062 12.247544 7.206874 6.793751 6.240383