Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00465 ATGGAGTCAGAAAATCTCCAAGAACTATTCGGTGGATACTCATCCTTGGTATCAGCTCCAAGACCACCTCTTCTTACTCATGAATGCATCCCCAACACCATCTTGGATGGAAATTCCTACAACAACAACAACCCTTATTTAATGGATCAAACCTTACCATGTTCAAGAGAGCATGAAAATCTATGGTTCAATTTCTCATCAAATTACCAACAAGAACAACCCAATGAACAGCAGCTTTCAAATCTCTATTCTTGTGTTCAATCTCCTACAAGCTATGGAGGTTTCCAAGGGCTATCAACTGGATCTAATACCAATTATTACAGCAATGTTTTTTCGAGTAGTTCAAGGAACAGCACTTCTACTACTTCAACGTTGGATTTGTTGTCTTCTTCATCATTACAAGCTGCTGATCCGCATCTGGGGTTGATCTCAAGTGGGTTTAACAAAAAGAGAGCCTTATTTGGGTATGTGCAAGATTCAATCAATAATAACAGCTCCAACAAAGTAAAGAGACCACTTAACAGCTCGTCATTGGCTAAAAAGTCCAATGCTCATGAATCAAAGAGATCCTGCCCACCATTGAAGGTGAGAAAAGAGAAACTGGGCGACAGGATTTCAGCACTTCAAAGGCTGGTTGCACCTTTTGGTAAGACTGATACTTCCTCTGTTCTAACCGAAGCAATTGGCTACATTCAGTTTCTTCATGACCAAGTTGAGACTTTAAGCATGCCATATTTAGGGTCATCTCAGAGCAAACCCTACCAGAAACTGCAGCCTGGTTCAACACAGGAAGATGGAACAAAACCAAGGCCAGATCTTAGGAGCAGAGGGCTATGCCTTATGCCTCTTTCTTGGGCCTCATTCATTCATGGCTATGATTAA 882 41.27 MESENLQELFGGYSSLVSAPRPPLLTHECIPNTILDGNSYNNNNPYLMDQTLPCSREHENLWFNFSSNYQQEQPNEQQLSNLYSCVQSPTSYGGFQGLSTGSNTNYYSNVFSSSSRNSTSTTSTLDLLSSSSLQAADPHLGLISSGFNKKRALFGYVQDSINNNSSNKVKRPLNSSSLAKKSNAHESKRSCPPLKVRKEKLGDRISALQRLVAPFGKTDTSSVLTEAIGYIQFLHDQVETLSMPYLGSSQSKPYQKLQPGSTQEDGTKPRPDLRSRGLCLMPLSWASFIHGYD 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2032412 2035152 + CmaCh07G004650.1 Cma07g00465 297780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00465 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 289 - -
Cma07g00465 293 MobiDBLite consensus disorder prediction 249 265 - -
Cma07g00465 293 MobiDBLite consensus disorder prediction 249 275 - -
Cma07g00465 293 Gene3D - 195 251 IPR036638 GO:0046983
Cma07g00465 293 MobiDBLite consensus disorder prediction 165 193 - -
Cma07g00465 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Cma07g00465 293 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 2 289 - -
Cma07g00465 293 MobiDBLite consensus disorder prediction 165 181 - -
Cma07g00465 293 CDD bHLH_AtbHLH_like 195 242 IPR045239 -
Cma07g00465 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 247 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00465 - - - cmos:111463101 513.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00720 Cma07g00465 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00465 Cma-Chr7:2032412 Cma08g00715 Cma-Chr8:4343801 2.58E-31 dispersed
Cma01g01931 Cma-Chr1:12539255 Cma07g00465 Cma-Chr7:2032412 2.66E-33 wgd
Cma12g00448 Cma-Chr12:2364423 Cma07g00465 Cma-Chr7:2032412 4.56E-34 wgd
Cma03g00720 Cma-Chr3:5810533 Cma07g00465 Cma-Chr7:2032412 6.36E-131 wgd
Cma07g00465 Cma-Chr7:2032412 Cma09g00137 Cma-Chr9:595234 1.63E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1030 . . . . . . . . . . Cma03g00720 Cma07g00465 Car03g00660 Car07g00412 Sed14g1156 Cpe19g00825 Cpe10g00636 Bhi03g00920 Tan03g2025 Cmetu08g1183 . Hepe04g1550 . . Cla01g01940 Cam01g2028 Cec04g1688 Cco04g1752 Clacu01g2051 Cmu01g1927 Cre04g1601 . . . . Lsi01g00645 . . Cme08g00886 . . . . . . . . . Cmo03g00746 Cmo07g00463 . . . . . . . . . . . . . . . . . . . . . Csa06g03280 Chy02g00614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011982 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00465 Cma_Chr07 FPKM 12.674016 14.499721 0.0 0.473488 0.495342 1.001296 1.185819 0.0 0.0 0.0