Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00469 ATGGCCTCCGACGGCTCCACCGCCGAATCTAACCTCGGAAATGCCAAGGCCATTCTCACCACCGTCGCTTCCTTTGCCGCCACCATCGTCCTTGCTCGCTCCATCGCCGACGACTTTTTCCCTTCCGATCTCCGTGAATATTTTTACGACAGAGCTCGAAGCATCTTCGGCCGATTCTCCTCCCAACTCACCATGGTCATCGGCGAAATGGACGGTTTCAGCCCCAACCAAATCTACGAAGCTGCCCATATCTATTTAGCCACCAAAATCCCCCCCTCAACTAAAATAGTCAAAGTCACAAAGCTCGAGAAGGAAGACAACATCACCACCGCCATGGAAAGCCACCAGGAAGTAATCGACACCTTCAACGGCGTTCAATTCAACTGGTTCTTCCTCTGTCAAGAAAACCGGCGGTGTGATTTCGACAACCCTCGTTCCTCCTACTCCACCATCGACCGATCCTTCAAGCTCTGTTTTCACTATAAACACAAAGAAATGGTCCTCAAATCGTATCTCCCCCATATTCTCCTCCAGGCCAAAGAATTGAAGCAGCAATCCAAAACCCTCAAGATTTTCGCCGCCGACTACCCAAATGTCGAATACGGCAGCATATCGGAGATGTGGATTCCGACGAATCTCGATCACCCGGCCACGTTCGAGAAGCTCGCAATGGACTCTGAAATCAAGGATTTCATTTTGAACGATCTTGAACGGTTTGTGAAGAGGAAGGAGTTTTACAGAAAGGTGGGTAAAGCTTGGAAGAGAGGGTATTTGCTGTACGGACCACCGGGAACAGGGAAATCGAGCTTAATCGCATCAATGGCGAATTACCTGAAATTCGATGTTTATGATTTGGAATTAACGGCGCTGGAATCCAATTCAGGTCTTAAGAAATTACTTATGGGTATTTCGAATCGTTCGATTTTAGTGGTGGAGGATATTGATTGTTCGATTCAGTTTCATGATCGGATGTCGGAAACGGAAGAAGATGATAAAACATCGTCGCCGCCGAGAAGAAAACAGGTGACGTTGTCGGGTTTGTTGAATTTCATCGACGGGTTGTGGTCGAGCTGTGGCGACGAGAGGATTATAATATTCACGACGAACCATAAAGAGAAGCTGGATCCGGCGTTACTCCGGCCGGGAAGAATGGATGTTCATGTTCACATGTCGTATTGCAGCCCTTGTGGATTTAGGGTTTTGGCTTCCAATTATCTTGGAATTGAGAACCATAAATTGTTTGGGGAAATTGAGGAACGGATTTCGAGTACCAAAGTGACTCCGGCGGAGGTGGCGGAGCAGCTGCTGAAGAACGACGACGGTGACAGAGCATTGTCGGAATTGATTGAATTTCTTGAAGCGAAAAAGAGGGAAAATGAAGAATCCGAGGCTAAAATCCGTCAAGCTGAACTGGAAGCCGTAGAAAAGGAGAAGAAAGCGGAAAAGAAAGGAGAAGAAAATGGCACCGTCTCTCCATTATCACAGACTACCACTCTTTCTTCTGATCCCTCACCGGCGTGA 1521 47.6 MASDGSTAESNLGNAKAILTTVASFAATIVLARSIADDFFPSDLREYFYDRARSIFGRFSSQLTMVIGEMDGFSPNQIYEAAHIYLATKIPPSTKIVKVTKLEKEDNITTAMESHQEVIDTFNGVQFNWFFLCQENRRCDFDNPRSSYSTIDRSFKLCFHYKHKEMVLKSYLPHILLQAKELKQQSKTLKIFAADYPNVEYGSISEMWIPTNLDHPATFEKLAMDSEIKDFILNDLERFVKRKEFYRKVGKAWKRGYLLYGPPGTGKSSLIASMANYLKFDVYDLELTALESNSGLKKLLMGISNRSILVVEDIDCSIQFHDRMSETEEDDKTSSPPRRKQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKEKLDPALLRPGRMDVHVHMSYCSPCGFRVLASNYLGIENHKLFGEIEERISSTKVTPAEVAEQLLKNDDGDRALSELIEFLEAKKRENEESEAKIRQAELEAVEKEKKAEKKGEENGTVSPLSQTTTLSSDPSPA 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2049428 2050948 - CmaCh07G004690.1 Cma07g00469 297784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00469 506 Gene3D - 389 456 - -
Cma07g00469 506 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Cma07g00469 506 Coils Coil 445 486 - -
Cma07g00469 506 CDD AAA 254 392 - -
Cma07g00469 506 Gene3D - 207 388 IPR027417 -
Cma07g00469 506 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 8 480 - -
Cma07g00469 506 MobiDBLite consensus disorder prediction 488 506 - -
Cma07g00469 506 Pfam Domain associated at C-terminal with AAA 40 132 IPR025753 -
Cma07g00469 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 441 IPR027417 -
Cma07g00469 506 MobiDBLite consensus disorder prediction 474 506 - -
Cma07g00469 506 PANTHER BCS1 AAA-TYPE ATPASE 8 480 - -
Cma07g00469 506 SMART AAA_5 253 394 IPR003593 -
Cma07g00469 506 Pfam ATPase family associated with various cellular activities (AAA) 258 391 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00469 - - K08900 mcha:111005310 748.043
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00724 Cma07g00469 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01927 Cma-Chr1:12532953 Cma07g00469 Cma-Chr7:2049428 2.72E-08 dispersed
Cma03g00723 Cma-Chr3:5820352 Cma07g00469 Cma-Chr7:2049428 1.07E-36 dispersed
Cma03g00724 Cma-Chr3:5825186 Cma07g00469 Cma-Chr7:2049428 0 dispersed
Cma04g00766 Cma-Chr4:3891482 Cma07g00469 Cma-Chr7:2049428 4.33E-145 dispersed
Cma07g00469 Cma-Chr7:2049428 Cma14g00612 Cma-Chr14:3031012 1.48E-115 dispersed
Cma09g00141 Cma-Chr9:604407 Cma07g00469 Cma-Chr7:2049428 1.58E-82 dispersed
Cma07g00468 Cma-Chr7:2042379 Cma07g00469 Cma-Chr7:2049428 5.64E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000988 5 1 1 3 2 3 2 3 3 3 2 3 4 2 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00469 Cma_Chr07 FPKM 6.311637 7.087916 1.375847 1.655354 2.796277 1.962332 2.037257 1.179164 0.835533 1.137665