Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00477 ATGGATAATCTCTCCCATTCTCGCCTCCCCAACAGGGGTTCTACCTCCGTTTCTAAGAAAATTTGCAATGGCAGTAATGGTGGTGGACCTTTTATAGCTCAGACTATCTACGACGATGTCTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCGTTGTCTCCTCGCTTCGAAGACTATGGTGAGATTTTTGGGAGCTTCCATGCCCTCCGTACTTCCTCCATTCCGATTCTTGATCTTCCGGCTGTCGATGAATCTGAGGTTTTCTTCGACGCTCGGAGCTCTGCATTTGACTATGCGGAGGTTTTTGGAGGGTTCGATGGTTTGAATTTTGCGATTTCTTATGAGGAACTGGTTGGCCCTTCCCAAGGCGTTGATGATGGCTCTTCCGACGAAGCTTGGACTCCAGCAGGAACTGATTCTTTGTCAGACTGTTCAGATCATTCTGGAAATTCTCATTGTATGTCAAATGAAGACTCTAATCAGTCATTTGGTGAAAGCACTGAATTTTCCATATCGTATAACAAGGTTAACCGAGAAGGCAATGGAAATGTATCAGATGGGAAGATACACGTAACCCAGTTGGAGATGCTACCTGGATTCTCATATCTGGTTGATGAAGCACATCCCTCACCAAAGGGAACATATGACGATCTATCCCTGAAGACCAATGACGACAGCTATCTCAATATAGATTTTGATACAGGAAAGGTTAAGGGCAAACATCCAAAGAACACTATGCCACCCCCAGTGGACAGTAATGGCTCTGGACATGTATTCGAGGATAGCCTTATTTGTCAAAATGAATTTGGTAGAGAGGTTTTTCATTCTCATGAAGATTTCATAACCGTATCTGAAATAAGCCTTAGAACTGAACCTTCTCAAGTTCCACCACCTACTCGGCCGCCTCCCAAGTATGCTGCCAAAATGGGGGACTACACTAAAATGGCTTTAAATTGTGAGGATGCTTCTGAAATAATTTCGGATGATCATTTTAATCCTTTATTTAATGTGGAGGTCGACGCTGGTTCATCTGCAGCAGCCTCTGCTGCAGCTATGAAAGAAGCAATGGAAAAGGCTCAAGCACGTTTGCAAAGTGCAAAAGATTTGTGGGAGAGGAAGAAAGAAGGAGTCCATGGACGGATGAGACTGGATGCAAAATATGATATGAGAGAAAAGGAAGGAAATTTGACCAAGATTCCAAATCGATTTAAGGGTTTTGCCGATGAAAGGGTGCAGGGTATTGGTGAAATTCATGACCATAAAATGAATTTTCCTGCTGGAGAGAAGAGGCAAAAGGATGTGAAGGCAACTGAGGTTTCTTCAACATTATTTGGAGGAGAGGAACTATTAACAGTTGCTGAAAAGACCGTATCAATTAGAAATGGGAGTAGATTTCTTGTGTCTGATAATCATGATTGCTGCAGTGAATGGAAAGATGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCTGGAAAGGAATTTGAGTTGTTGGACAATGATGAGATTTCCAACTTTGTGACTGGACCAATAGTAGCAGAGACCATCATTCAAGCATGGGAGAACGATAAAGATCAAGACAAGGATGGGAAACCATTCCATACGGCTCATGCTCTGAATGAAAACGTGAAAAATTTGGAGAATATGGTCCATGGAAAGGTGGAAGATAAGATAAAACTAAAACCAAATAAAGACGAGACTAGGCAAAAAGAGCAGGTGAAACTTCATCAAGGTGTTTGTGATCTTGAAGCAAATGATAGGATATTTGGAGTTGCACAAGACTTTATGGAAGAAAAAAAGCGTACGTCCAATGCTAGTGAACTAGAGAAACATGAAAACCGTATTGAGTTTAAACAACTGGACAGTGAGCTAAAAGTTGATCAACCTGTTTCACCAATTGATATCGAACAAGAAAAGAAGAAGGTTGTTAAAGGAAAGGAAAATGGAAATATTCTCAAGGAATCTCATAGAAAGGAAAACAATGCAAATAAAATGGAAGAAGCCCTTGAGAATGAGAAAAGAGAAAAGCTGTTCTCGGAGGCTTCTGAAAGGGAAAAGCTTGAGCAAAAAAAGATGATGTTCCTCGAGCAAGAAGAAAATAAGAAAAGACTCAATTTGGTTCTTGCGGATGAGAACTTTAGGAGACAGGTGGCTCGTGAAATAGAACTGGATGGTGTCCATGGGAAGGAAGATCATGGGAAAAGGGGAAAAGAGGCTGCCAAAGTTGTAAGTGAGAGATCAAAATTAGCTCATGAGAGAGAAGATGACGACAAATGGTCAAAAAATATTCAGTATAGAGAAGAATGTGAAATAGGAGTTAAGGATTCATTTCAGCGTTTGAACATTGAACGCAGGCCAAGTGATGTGGGTAAGTGTAAAGTGACTCAGATGTTGGTTGAAGATTCACAATATAGTGCAGATCTCAAGGGTGCGAGTATGGAGCATGATGAATTAGAGAAATTGAGTGACAGACACGAAGTAAACTCAACAATAGGATCTCAAGCATATGTGGAAGTGAAGGATTTGGGGATATCTGCTGCGGCATTTCAAATGCATGATGACCAAAACCACTTACCCACGGTACTAGCTTGTTCAATAGGGGTGCCTGAAGAATTCTCTGTTGTAGATGAAAGTGGAGTGAGGACTACCGTCACAGGTAATAAAACTTCATCAGAAAGTGATGGAATTGATAATCTGCAATTTTCCAAAAATTCTTCTGCATTGGGTGCGAGGCAGGCAGAGATAGAACATCATAAAGTTTCAGTGGAAATGGAAGATGCTGATATTCAACTTTCTTTCAATGAATGGACCAAAAAAGTAGGCAAAGAAACAAGCTTTCAACCCAAACCTGGTGATACACAAGCAGAAGCAACTAATTCGGAAGATGCATTTTCATCTGAAAACTCAACATGTGTGGATGAGCGAGAGAATAAAATTGAAGAGAACGCACTTAAGATGGATGATATGAAAACATCACCTCCTCTGGATAGAAGTGGTGAGAGAGCAGGCCAATCTAACGTTGGCATGGAAGAGTTTGTAGGGAGAAAGACATTTGTCACCAGAAGGGATTGTGATCCTGAACAACCAGAAAGTAACTTGTTTTGTCGTATGGAAGATAAAGTGAAGTTCTCTAACCAGGCTGAAGATGAGGGACAAACAGTTTCTGTTCAGGGGGTGAATATAAAGGCTGAGAAAGGAAGTGGAATGGAGTCAACTCGGCCAACTATTTCAGGAAGGACACAAAAGAGCGGGGAATTTGCCTATGAGGTCAATGCAAATCAGGCCACAGAAAGAAAGGAAAAGCTTGTGAACCAGAGCCATAAATCTAAAGGAAAAGAGAGTGAGAGAGTGAGGAGCGAAGCAGAATTTGAGAATGATATGCTTCGAAAATTGGAAGAAGAGAGGGAAAGGGAAAGAGAGAGAGAAAAGGATAGAATGCATATTGATAGAATTGCTCTTGAACCACGTGATAGAGTTGGTGCTGAAACTCGTGAAAGGGCAGAAAGGACTGCTCTGGAGAGGATGACTGCTGAAGCTCGACAAAGAGCATTGACAGAGGCACGTGAAAGATTGGAAAAGGCTTGTGCAGAGGCGAGGGAAAATTCATTGGCTGGAAAGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCAGCCGTAGAAAGAGCAACGGCAGAGGCCAGGGAGAGAGCTGCAGAGAAAGCCATGTCTGACAGGACTTCCTTTGGGGTGAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCGAGAAATAATGAAATGAGACAGAAGTCTTCATCCTCTGGTCAGCCCAGCCTACAATCTCAGAGCTTTGGCTCTTCCCTTGATTCAAGATATGCCTACCACTCGGCTTATGATGAGAGGAATGGGGGCGTTGATGGTGAATCGCCTCAAAGATGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGGACGTGCAGCAAAGGCTCTGGCAGAAAAAAATATGCGTGATCTTCTTGCTCAAAGAGAGCAAGCTGAGAGAAATAGATTGGCTGAGACATTGGATGCTGACGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCCTTGCTTTCTACACTTCAATATATCCTTGGACCTGGTAGTGGTTGGCAGCCCATTCCCTTAACGGAAGTTATTACTGCAGCTGCTGTAAAGAAAGCGTACAGGAAAGCCACTCTGTGTGTTCATCCAGACAAATTACAACAACGGGGTGCAAGTATTCAGCAAAAGTATATATGTGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCGGAAGAGCGGTAG 4347 42.42 MDNLSHSRLPNRGSTSVSKKICNGSNGGGPFIAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRTSSIPILDLPAVDESEVFFDARSSAFDYAEVFGGFDGLNFAISYEELVGPSQGVDDGSSDEAWTPAGTDSLSDCSDHSGNSHCMSNEDSNQSFGESTEFSISYNKVNREGNGNVSDGKIHVTQLEMLPGFSYLVDEAHPSPKGTYDDLSLKTNDDSYLNIDFDTGKVKGKHPKNTMPPPVDSNGSGHVFEDSLICQNEFGREVFHSHEDFITVSEISLRTEPSQVPPPTRPPPKYAAKMGDYTKMALNCEDASEIISDDHFNPLFNVEVDAGSSAAASAAAMKEAMEKAQARLQSAKDLWERKKEGVHGRMRLDAKYDMREKEGNLTKIPNRFKGFADERVQGIGEIHDHKMNFPAGEKRQKDVKATEVSSTLFGGEELLTVAEKTVSIRNGSRFLVSDNHDCCSEWKDATEFFELARADISGKEFELLDNDEISNFVTGPIVAETIIQAWENDKDQDKDGKPFHTAHALNENVKNLENMVHGKVEDKIKLKPNKDETRQKEQVKLHQGVCDLEANDRIFGVAQDFMEEKKRTSNASELEKHENRIEFKQLDSELKVDQPVSPIDIEQEKKKVVKGKENGNILKESHRKENNANKMEEALENEKREKLFSEASEREKLEQKKMMFLEQEENKKRLNLVLADENFRRQVAREIELDGVHGKEDHGKRGKEAAKVVSERSKLAHEREDDDKWSKNIQYREECEIGVKDSFQRLNIERRPSDVGKCKVTQMLVEDSQYSADLKGASMEHDELEKLSDRHEVNSTIGSQAYVEVKDLGISAAAFQMHDDQNHLPTVLACSIGVPEEFSVVDESGVRTTVTGNKTSSESDGIDNLQFSKNSSALGARQAEIEHHKVSVEMEDADIQLSFNEWTKKVGKETSFQPKPGDTQAEATNSEDAFSSENSTCVDERENKIEENALKMDDMKTSPPLDRSGERAGQSNVGMEEFVGRKTFVTRRDCDPEQPESNLFCRMEDKVKFSNQAEDEGQTVSVQGVNIKAEKGSGMESTRPTISGRTQKSGEFAYEVNANQATERKEKLVNQSHKSKGKESERVRSEAEFENDMLRKLEEEREREREREKDRMHIDRIALEPRDRVGAETRERAERTALERMTAEARQRALTEARERLEKACAEARENSLAGKATMEARVKAERAAVERATAEARERAAEKAMSDRTSFGVRERMERSVSDKFSASSRNNEMRQKSSSSGQPSLQSQSFGSSLDSRYAYHSAYDERNGGVDGESPQRCKARLERHQRTAGRAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILGPGSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 1448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2080968 2086833 - CmaCh07G004770.1 Cma07g00477 297792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00477 1448 Coils Coil 349 373 - -
Cma07g00477 1448 Gene3D DnaJ domain 1321 1448 IPR036869 -
Cma07g00477 1448 Coils Coil 1328 1348 - -
Cma07g00477 1448 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 20 1443 - -
Cma07g00477 1448 ProSiteProfiles dnaJ domain profile. 1384 1448 IPR001623 -
Cma07g00477 1448 SUPERFAMILY Chaperone J-domain 1305 1447 IPR036869 -
Cma07g00477 1448 CDD DnaJ 1396 1441 IPR001623 -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1300 1325 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 121 161 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1 21 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 133 161 - -
Cma07g00477 1448 Coils Coil 1175 1202 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1225 1255 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 943 1007 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 729 756 - -
Cma07g00477 1448 Coils Coil 653 683 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1047 1185 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1225 1285 - -
Cma07g00477 1448 PANTHER AUXILIN, ISOFORM A 20 1443 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 969 996 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1095 1185 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1297 1325 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1071 1091 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 1256 1285 - -
Cma07g00477 1448 Coils Coil 1207 1227 - -
Cma07g00477 1448 Coils Coil 1115 1142 - -
Cma07g00477 1448 MobiDBLite consensus disorder prediction 943 968 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00477 - - - bhj:120074172 2074.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00736 Cma-Chr3:5861482 Cma07g00477 Cma-Chr7:2080968 0 dispersed
Cma04g02386 Cma-Chr4:16503357 Cma07g00477 Cma-Chr7:2080968 1.28E-55 dispersed
Cma07g00083 Cma-Chr7:499464 Cma07g00477 Cma-Chr7:2080968 8.94E-33 dispersed
Cma07g00477 Cma-Chr7:2080968 Cma07g01273 Cma-Chr7:7101688 7.20E-59 dispersed
Cma01g01918 Cma-Chr1:12495153 Cma07g00477 Cma-Chr7:2080968 4.57E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00477 Cma_Chr07 FPKM 7.057022 8.193819 2.500596 2.109824 14.849362 13.83156 14.712374 1.521402 1.428603 1.212871