Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00480 ATGAAGCAGAGGAAGGATGGATATGAACCGTCTGATACGGAGACAGAATGGCAAGAGAGCCCTTGGAATGACCCTAAGGCGAAGAAACTTGTACTGGATTACAATAACCGACGAGCAGATTCGGCAGCATCGAAGAAGTTCAGTACTGCAGCGAATATTTCTCCTCCTGGTTCGAGAAGAAACAATGGCAAAACGCCTCACAGGCCGGCCAAAGACGACAGTGTTCTAGTCATGCATCAGAGAAACATCAGCCCCTTGTCGAGAGCAGAAAGAAGAAGACACAAATCTCCTTTTAAAGCTGGAGCAGAGGAAATTGGAAGCTCTAGCATGAGGTCAAGAAAAGAGGAGAAGTTGACTTATTCTCATGGGAGTAACAGAATAAGTCAAAAGCCAAACCACAATAGAAGATCAGTGACTGCTCCAAGGTTGAGAACGAGAGATGAACATATGAGTGCTGTTAACGATTTATCTCAAAGGAGAGACAGAGCTGCTCCATCCTTGCAGGTCAACTCCATCCTGCACCAGTCAAAGGAGGTTTCTCAAGTGAACTCTCTTTCTGTTGGTGAAATGAACGAGATGATTGCAGATGGAAGGGTCCATAGAGGTTCGATTTTTAATGAACCGATGGTTGAAAGCACGGGGTCAATCTCGCCGGGGGACATATTCTTTTCGCGTGATGGCTTGGCTATTGGAATAAATAACAATGTCACAGGAAAGAGAAATGCATTCAAGAATTATATAAGTCCAAGGCCTAACTTTGTGTCCAAAAAGAATGATGATACTTATAATCAAGTTGAAGTAAATGCTAATGGTAGAGGGGTTACTTCTGCTGGAGCTGGTTTGTCAACGACCACAACCAATAGCGCTGCTGTAAGTAGAGAAAATAGTAGTAGAATTAGCACTGAAAGTAGTAAGATCAGTGATGTGAGTGGAAGAACAAGTGAAAGTACAAGAAGGTTTATAGCCAGTAGACGAAAGAAGAAGAACGAGATGTGGTTTTCTTGTATGAGGAATGGGCCCTGCAGGACGACGAAATCGCCCGAAAAGCGGGAGTTTGATGAAGCTACATTCATTGAAAGAGCAAATGTTGTTGAATACTTGAAACCCTTTTGGGCAGATAAGCATCGACCGGTGTCCTTAAGTGGATTCGCTTTCCATAAGCCTGAGGCGCAAACTCTCAAGCAATTAGTTTTACAAGACAGTTTTCCCCACATCCTGTTCAAGGGTCCGTGCGGATCTGGCAAACGAGTGCTCATTATGGCTCTTTTGCGTGAGATATATGGCGATTCATGTTGGAATGTTTCTCATGATTTGCGATGTTTCCAGATTCAGGAAAGAAAACTAACGCAAGTCTTTGTTCCATTGACGTCAAGTGCTCACCATGTGGAACTAAATTTAAGCTCAGAAGCAAATGCTAAGTATGCTCTACTGGGATTGGCTAAAGAAATAGGCAGTGAATATTCCATTAATGTGGAGGCAAGAAATCTCAATCCGAAGGCTAGTTTCAAAGTGGTAATCCTTTTAGATGTAGACAAAGCTGTAGAGGATATTCAACATTTGCTTAGGTGGATTATGGATGGCTATAAGGATGCCTGCAAAGTAGTACTCTGTTGTGACAACGACACAGGCATCCTTGACTCAGTGATAAGCCGCTGCAAAGTTATCAAAATTAACCCTCCAGTAACTCATGAAATCATAGATGTACTTATCCAAATAGCAAAGAAGGAGGAATTTGACCTGCCTATGAACTTTGCTTCTAAGATTGCTACTAAAGCAAAGCAGAACCTGAGAAAAGCAATCATGGCGCTTGAAGCATGCAAGGCACACAATTATCCATTTTCTGATGACCAGCCAATCCCCATTGGATGGGAAGAGGCCGTGGTAGAACTCGCAGCTCATATCCTCGAAGACCCGACGAATCCGAGATTACACCTAGTAAAAGAAAAAATTCAGAAGCTTCTAGTTGATTCAGTTCATCCAAAACTAATCCTCCAGAAGCTCGTGGAAGAATTTCTGAAAAGAATTGAGCTGAGGTCAAGGAGGGAACTTTATTACTGGCATGCTTATTATAACAAGAGACTCCCAACTGAAACTGGAACAGGCGCCCTACCCAAATTGGAAGAATTCGTGGCAAAGTTCATGAGCATGTACAGGAAGAGCTCCACCAACCTCGTTTATGATTGA 2184 42.86 MKQRKDGYEPSDTETEWQESPWNDPKAKKLVLDYNNRRADSAASKKFSTAANISPPGSRRNNGKTPHRPAKDDSVLVMHQRNISPLSRAERRRHKSPFKAGAEEIGSSSMRSRKEEKLTYSHGSNRISQKPNHNRRSVTAPRLRTRDEHMSAVNDLSQRRDRAAPSLQVNSILHQSKEVSQVNSLSVGEMNEMIADGRVHRGSIFNEPMVESTGSISPGDIFFSRDGLAIGINNNVTGKRNAFKNYISPRPNFVSKKNDDTYNQVEVNANGRGVTSAGAGLSTTTTNSAAVSRENSSRISTESSKISDVSGRTSESTRRFIASRRKKKNEMWFSCMRNGPCRTTKSPEKREFDEATFIERANVVEYLKPFWADKHRPVSLSGFAFHKPEAQTLKQLVLQDSFPHILFKGPCGSGKRVLIMALLREIYGDSCWNVSHDLRCFQIQERKLTQVFVPLTSSAHHVELNLSSEANAKYALLGLAKEIGSEYSINVEARNLNPKASFKVVILLDVDKAVEDIQHLLRWIMDGYKDACKVVLCCDNDTGILDSVISRCKVIKINPPVTHEIIDVLIQIAKKEEFDLPMNFASKIATKAKQNLRKAIMALEACKAHNYPFSDDQPIPIGWEEAVVELAAHILEDPTNPRLHLVKEKIQKLLVDSVHPKLILQKLVEEFLKRIELRSRRELYYWHAYYNKRLPTETGTGALPKLEEFVAKFMSMYRKSSTNLVYD 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2093288 2096821 - CmaCh07G004800.1 Cma07g00480 297795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00480 727 MobiDBLite consensus disorder prediction 272 317 - -
Cma07g00480 727 MobiDBLite consensus disorder prediction 85 100 - -
Cma07g00480 727 MobiDBLite consensus disorder prediction 272 319 - -
Cma07g00480 727 MobiDBLite consensus disorder prediction 1 142 - -
Cma07g00480 727 Gene3D - 562 619 - -
Cma07g00480 727 MobiDBLite consensus disorder prediction 41 61 - -
Cma07g00480 727 MobiDBLite consensus disorder prediction 122 138 - -
Cma07g00480 727 CDD AAA 389 555 - -
Cma07g00480 727 Gene3D - 369 560 IPR027417 -
Cma07g00480 727 SUPERFAMILY post-AAA+ oligomerization domain-like 622 717 IPR008921 GO:0003677|GO:0006260
Cma07g00480 727 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 177 723 - -
Cma07g00480 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 606 IPR027417 -
Cma07g00480 727 Gene3D - 622 717 - -
Cma07g00480 727 PANTHER OS02G0704966 PROTEIN 177 723 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00480 K10756 RFC3_5; replication factor C subunit 3/5 - csv:101218071 1269.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00215 Cma-Chr3:3256437 Cma07g00480 Cma-Chr7:2093288 3.81E-68 dispersed
Cma06g01164 Cma-Chr6:7826598 Cma07g00480 Cma-Chr7:2093288 2.98E-20 dispersed
Cma07g00480 Cma-Chr7:2093288 Cma16g01020 Cma-Chr16:7853491 3.29E-09 dispersed
Cma07g00480 Cma-Chr7:2093288 Cma15g00666 Cma-Chr15:3169342 7.32E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00480 Cma_Chr07 FPKM 1.246709 0.854462 0.0 0.0 0.201577 0.0 0.097685 2.81762 2.373298 3.103549